Hb_002631_020

Information

Type -
Description -
Location Contig2631: 14857-16675
Sequence    

Annotation

kegg
ID rcu:RCOM_1573850
description 7-dehydrocholesterol reductase, putative (EC:1.3.1.21)
nr
ID XP_012087324.1
description PREDICTED: protein FAM32A-like [Jatropha curcas]
swissprot
ID Q6GQN4
description Protein FAM32A-like OS=Danio rerio GN=fam32al PE=3 SV=1
trembl
ID B9RHV1
description 7-dehydrocholesterol reductase, putative OS=Ricinus communis GN=RCOM_1573850 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein fam32a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27438: 14869-16635
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002631_020 0.0 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
2 Hb_003018_050 0.0602831129 - - PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Jatropha curcas]
3 Hb_004449_200 0.0605193159 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Populus euphratica]
4 Hb_006452_040 0.0639121916 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
5 Hb_000122_020 0.0649779343 - - PREDICTED: alpha-soluble NSF attachment protein 2 [Jatropha curcas]
6 Hb_004374_140 0.0738014433 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
7 Hb_001191_090 0.0739803535 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
8 Hb_001461_010 0.07429241 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
9 Hb_002431_050 0.0791982492 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
10 Hb_005463_140 0.0824444547 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
11 Hb_000441_190 0.0842009169 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
12 Hb_003053_030 0.0843402347 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
13 Hb_001882_070 0.0845875532 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634911 [Jatropha curcas]
14 Hb_000364_030 0.0879439303 - - RNA binding protein, putative [Ricinus communis]
15 Hb_010042_010 0.0880714222 - - Urease accessory protein ureD, putative [Ricinus communis]
16 Hb_017491_060 0.0888598096 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
17 Hb_000173_220 0.0892825231 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
18 Hb_001842_040 0.0900705398 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
19 Hb_006541_010 0.0910595654 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
20 Hb_000975_110 0.0918272846 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]

Gene co-expression network

sample Hb_002631_020 Hb_002631_020 Hb_003018_050 Hb_003018_050 Hb_002631_020--Hb_003018_050 Hb_004449_200 Hb_004449_200 Hb_002631_020--Hb_004449_200 Hb_006452_040 Hb_006452_040 Hb_002631_020--Hb_006452_040 Hb_000122_020 Hb_000122_020 Hb_002631_020--Hb_000122_020 Hb_004374_140 Hb_004374_140 Hb_002631_020--Hb_004374_140 Hb_001191_090 Hb_001191_090 Hb_002631_020--Hb_001191_090 Hb_003018_050--Hb_006452_040 Hb_004125_110 Hb_004125_110 Hb_003018_050--Hb_004125_110 Hb_001158_150 Hb_001158_150 Hb_003018_050--Hb_001158_150 Hb_130235_010 Hb_130235_010 Hb_003018_050--Hb_130235_010 Hb_003018_050--Hb_000122_020 Hb_004449_200--Hb_000122_020 Hb_007926_060 Hb_007926_060 Hb_004449_200--Hb_007926_060 Hb_004449_200--Hb_001191_090 Hb_000364_030 Hb_000364_030 Hb_004449_200--Hb_000364_030 Hb_001461_010 Hb_001461_010 Hb_004449_200--Hb_001461_010 Hb_001155_040 Hb_001155_040 Hb_006452_040--Hb_001155_040 Hb_007317_160 Hb_007317_160 Hb_006452_040--Hb_007317_160 Hb_001221_310 Hb_001221_310 Hb_006452_040--Hb_001221_310 Hb_005463_140 Hb_005463_140 Hb_006452_040--Hb_005463_140 Hb_001307_090 Hb_001307_090 Hb_000122_020--Hb_001307_090 Hb_000122_020--Hb_001461_010 Hb_004659_060 Hb_004659_060 Hb_000122_020--Hb_004659_060 Hb_008544_010 Hb_008544_010 Hb_004374_140--Hb_008544_010 Hb_004374_140--Hb_001461_010 Hb_004336_050 Hb_004336_050 Hb_004374_140--Hb_004336_050 Hb_180301_010 Hb_180301_010 Hb_004374_140--Hb_180301_010 Hb_124755_010 Hb_124755_010 Hb_004374_140--Hb_124755_010 Hb_000173_220 Hb_000173_220 Hb_001191_090--Hb_000173_220 Hb_003053_030 Hb_003053_030 Hb_001191_090--Hb_003053_030 Hb_148200_010 Hb_148200_010 Hb_001191_090--Hb_148200_010 Hb_006573_220 Hb_006573_220 Hb_001191_090--Hb_006573_220 Hb_000181_300 Hb_000181_300 Hb_001191_090--Hb_000181_300 Hb_003376_030 Hb_003376_030 Hb_001191_090--Hb_003376_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.5109 7.49842 9.80084 31.8142 17.4466 24.757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.5512 70.7281 40.623 16.7764 11.7664

CAGE analysis