Hb_002631_030

Information

Type -
Description -
Location Contig2631: 18603-31147
Sequence    

Annotation

kegg
ID rcu:RCOM_1573860
description hypothetical protein
nr
ID XP_002513321.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q4V3C1
description Mediator of RNA polymerase II transcription subunit 8 OS=Arabidopsis thaliana GN=MED8 PE=1 SV=1
trembl
ID B9RHV2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1573860 PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 8 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27440: 22906-23360 , PASA_asmbl_27441: 31055-31653
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002631_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000329_760 0.0723488392 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
3 Hb_001946_290 0.086029161 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like isoform X1 [Jatropha curcas]
4 Hb_000137_090 0.0950463872 - - PREDICTED: HAUS augmin-like complex subunit 3 [Vitis vinifera]
5 Hb_000460_030 0.0960919991 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
6 Hb_002006_030 0.1011828066 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER [Jatropha curcas]
7 Hb_031340_050 0.1021918489 - - PREDICTED: tropinone reductase 1-like isoform X1 [Jatropha curcas]
8 Hb_001123_040 0.1027488033 - - PREDICTED: R3H domain-containing protein 1-like [Jatropha curcas]
9 Hb_002471_290 0.1030593562 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X1 [Jatropha curcas]
10 Hb_002197_050 0.1052670586 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
11 Hb_002007_080 0.1059344106 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
12 Hb_005539_280 0.1060554169 - - PREDICTED: uncharacterized protein LOC105644562 [Jatropha curcas]
13 Hb_001235_150 0.1062949591 - - PREDICTED: chaperone protein dnaJ 13 isoform X1 [Jatropha curcas]
14 Hb_000146_070 0.1065627822 - - PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Jatropha curcas]
15 Hb_019280_050 0.108213228 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 [Jatropha curcas]
16 Hb_004254_090 0.1082309862 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
17 Hb_002814_070 0.1088763721 - - PREDICTED: uncharacterized protein LOC104877459 [Vitis vinifera]
18 Hb_000621_070 0.1102185012 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
19 Hb_010098_050 0.1108170596 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
20 Hb_001541_290 0.1110169274 - - PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]

Gene co-expression network

sample Hb_002631_030 Hb_002631_030 Hb_000329_760 Hb_000329_760 Hb_002631_030--Hb_000329_760 Hb_001946_290 Hb_001946_290 Hb_002631_030--Hb_001946_290 Hb_000137_090 Hb_000137_090 Hb_002631_030--Hb_000137_090 Hb_000460_030 Hb_000460_030 Hb_002631_030--Hb_000460_030 Hb_002006_030 Hb_002006_030 Hb_002631_030--Hb_002006_030 Hb_031340_050 Hb_031340_050 Hb_002631_030--Hb_031340_050 Hb_001414_030 Hb_001414_030 Hb_000329_760--Hb_001414_030 Hb_012490_070 Hb_012490_070 Hb_000329_760--Hb_012490_070 Hb_001195_200 Hb_001195_200 Hb_000329_760--Hb_001195_200 Hb_000258_260 Hb_000258_260 Hb_000329_760--Hb_000258_260 Hb_002014_020 Hb_002014_020 Hb_000329_760--Hb_002014_020 Hb_000041_110 Hb_000041_110 Hb_001946_290--Hb_000041_110 Hb_001235_150 Hb_001235_150 Hb_001946_290--Hb_001235_150 Hb_004254_090 Hb_004254_090 Hb_001946_290--Hb_004254_090 Hb_001541_290 Hb_001541_290 Hb_001946_290--Hb_001541_290 Hb_002518_260 Hb_002518_260 Hb_001946_290--Hb_002518_260 Hb_002197_050 Hb_002197_050 Hb_000137_090--Hb_002197_050 Hb_000137_090--Hb_031340_050 Hb_001357_250 Hb_001357_250 Hb_000137_090--Hb_001357_250 Hb_000031_120 Hb_000031_120 Hb_000137_090--Hb_000031_120 Hb_000139_290 Hb_000139_290 Hb_000137_090--Hb_000139_290 Hb_001009_250 Hb_001009_250 Hb_000137_090--Hb_001009_250 Hb_006570_080 Hb_006570_080 Hb_000460_030--Hb_006570_080 Hb_000431_170 Hb_000431_170 Hb_000460_030--Hb_000431_170 Hb_003582_060 Hb_003582_060 Hb_000460_030--Hb_003582_060 Hb_000483_260 Hb_000483_260 Hb_000460_030--Hb_000483_260 Hb_005588_060 Hb_005588_060 Hb_000460_030--Hb_005588_060 Hb_008725_230 Hb_008725_230 Hb_000460_030--Hb_008725_230 Hb_009486_140 Hb_009486_140 Hb_002006_030--Hb_009486_140 Hb_002660_010 Hb_002660_010 Hb_002006_030--Hb_002660_010 Hb_002218_090 Hb_002218_090 Hb_002006_030--Hb_002218_090 Hb_000684_470 Hb_000684_470 Hb_002006_030--Hb_000684_470 Hb_001862_210 Hb_001862_210 Hb_002006_030--Hb_001862_210 Hb_070256_010 Hb_070256_010 Hb_002006_030--Hb_070256_010 Hb_031340_050--Hb_001357_250 Hb_031340_050--Hb_002197_050 Hb_001579_220 Hb_001579_220 Hb_031340_050--Hb_001579_220 Hb_000252_170 Hb_000252_170 Hb_031340_050--Hb_000252_170 Hb_023732_030 Hb_023732_030 Hb_031340_050--Hb_023732_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.2781 2.13952 3.57797 1.46479 2.35588 2.21325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.19264 4.27123 3.92022 5.07616 2.93723

CAGE analysis