Hb_002631_050

Information

Type -
Description -
Location Contig2631: 41362-48924
Sequence    

Annotation

kegg
ID rcu:RCOM_1573880
description membrane associated ring finger 1,8, putative
nr
ID XP_002513323.1
description membrane associated ring finger 1,8, putative [Ricinus communis]
swissprot
ID Q8TCQ1
description E3 ubiquitin-protein ligase MARCH1 OS=Homo sapiens GN=MARCH1 PE=1 SV=1
trembl
ID B9RHV4
description Membrane associated ring finger 1,8, putative OS=Ricinus communis GN=RCOM_1573880 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase march8 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27443: 41427-42538 , PASA_asmbl_27445: 31872-48568
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002631_050 0.0 - - membrane associated ring finger 1,8, putative [Ricinus communis]
2 Hb_185467_020 0.0567566461 - - Cucumisin precursor, putative [Ricinus communis]
3 Hb_008453_150 0.0618391175 - - PREDICTED: uncharacterized protein LOC105635307 isoform X2 [Jatropha curcas]
4 Hb_000017_120 0.0666523344 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
5 Hb_000340_510 0.0762979204 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
6 Hb_000733_060 0.0768681914 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
7 Hb_022256_040 0.0770675517 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
8 Hb_005288_160 0.0846830102 - - PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]
9 Hb_000084_310 0.0847639835 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
10 Hb_000481_010 0.0851672464 - - PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]
11 Hb_003609_040 0.0853087852 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
12 Hb_003297_030 0.0857444938 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
13 Hb_182026_010 0.0877823138 - - hypothetical protein CICLE_v10003487mg, partial [Citrus clementina]
14 Hb_001135_160 0.08821644 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
15 Hb_002874_070 0.089105171 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
16 Hb_014568_030 0.0901092112 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
17 Hb_002818_040 0.090134368 - - tRNA synthetase-related family protein [Populus trichocarpa]
18 Hb_001936_050 0.0928414958 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
19 Hb_002377_040 0.0932248544 - - serine/threonine protein kinase, putative [Ricinus communis]
20 Hb_098993_010 0.0932320305 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002631_050 Hb_002631_050 Hb_185467_020 Hb_185467_020 Hb_002631_050--Hb_185467_020 Hb_008453_150 Hb_008453_150 Hb_002631_050--Hb_008453_150 Hb_000017_120 Hb_000017_120 Hb_002631_050--Hb_000017_120 Hb_000340_510 Hb_000340_510 Hb_002631_050--Hb_000340_510 Hb_000733_060 Hb_000733_060 Hb_002631_050--Hb_000733_060 Hb_022256_040 Hb_022256_040 Hb_002631_050--Hb_022256_040 Hb_185467_020--Hb_008453_150 Hb_002874_070 Hb_002874_070 Hb_185467_020--Hb_002874_070 Hb_000803_150 Hb_000803_150 Hb_185467_020--Hb_000803_150 Hb_001936_050 Hb_001936_050 Hb_185467_020--Hb_001936_050 Hb_001981_070 Hb_001981_070 Hb_185467_020--Hb_001981_070 Hb_000084_310 Hb_000084_310 Hb_008453_150--Hb_000084_310 Hb_008453_150--Hb_001981_070 Hb_014568_030 Hb_014568_030 Hb_008453_150--Hb_014568_030 Hb_057183_040 Hb_057183_040 Hb_008453_150--Hb_057183_040 Hb_001006_170 Hb_001006_170 Hb_000017_120--Hb_001006_170 Hb_001030_120 Hb_001030_120 Hb_000017_120--Hb_001030_120 Hb_012340_030 Hb_012340_030 Hb_000017_120--Hb_012340_030 Hb_004223_130 Hb_004223_130 Hb_000017_120--Hb_004223_130 Hb_002272_250 Hb_002272_250 Hb_000017_120--Hb_002272_250 Hb_002818_040 Hb_002818_040 Hb_000340_510--Hb_002818_040 Hb_000481_010 Hb_000481_010 Hb_000340_510--Hb_000481_010 Hb_000001_180 Hb_000001_180 Hb_000340_510--Hb_000001_180 Hb_000107_100 Hb_000107_100 Hb_000340_510--Hb_000107_100 Hb_002026_110 Hb_002026_110 Hb_000340_510--Hb_002026_110 Hb_017168_010 Hb_017168_010 Hb_000340_510--Hb_017168_010 Hb_005288_160 Hb_005288_160 Hb_000733_060--Hb_005288_160 Hb_023226_060 Hb_023226_060 Hb_000733_060--Hb_023226_060 Hb_000733_060--Hb_022256_040 Hb_000768_030 Hb_000768_030 Hb_000733_060--Hb_000768_030 Hb_001001_160 Hb_001001_160 Hb_000733_060--Hb_001001_160 Hb_002997_100 Hb_002997_100 Hb_022256_040--Hb_002997_100 Hb_022256_040--Hb_002874_070 Hb_000230_330 Hb_000230_330 Hb_022256_040--Hb_000230_330 Hb_001584_110 Hb_001584_110 Hb_022256_040--Hb_001584_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
92.6287 14.1862 14.1592 15.7056 92.0517 86.9174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.5588 49.4566 65.0366 21.965 12.822

CAGE analysis