Hb_002631_140

Information

Type -
Description -
Location Contig2631: 123828-134430
Sequence    

Annotation

kegg
ID rcu:RCOM_1574610
description Cell division protein ftsH, putative (EC:3.6.4.3)
nr
ID XP_012087358.1
description PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Jatropha curcas]
swissprot
ID Q9SAJ3
description ATP-dependent zinc metalloprotease FTSH 12, chloroplastic OS=Arabidopsis thaliana GN=FTSH12 PE=2 SV=2
trembl
ID B9RHY7
description Cell division protein ftsH, putative OS=Ricinus communis GN=RCOM_1574610 PE=4 SV=1
Gene Ontology
ID GO:0004222
description atp-dependent zinc metalloprotease ftsh chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27466: 123873-134287
cDNA
(Sanger)
(ID:Location)		 023_M20.ab1: 124116-127458 , 028_E23.ab1: 124116-127444 , 050_E07.ab1: 123925-125377

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002631_140 0.0 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Jatropha curcas]
2 Hb_000082_070 0.0557903392 - - PREDICTED: phosphatidylinositol 4-kinase alpha 1 [Jatropha curcas]
3 Hb_009771_110 0.0631560839 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 [Jatropha curcas]
4 Hb_160459_040 0.0671574414 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
5 Hb_143489_010 0.0714583017 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]
6 Hb_000261_030 0.0720356863 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
7 Hb_001789_040 0.0762914206 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
8 Hb_005402_040 0.0768913237 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
9 Hb_004064_050 0.0791862446 - - Structural maintenance of chromosome, putative [Ricinus communis]
10 Hb_003124_160 0.0801002217 - - dynamin, putative [Ricinus communis]
11 Hb_000086_150 0.0818331735 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X1 [Jatropha curcas]
12 Hb_007305_020 0.0831507191 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
13 Hb_003739_030 0.0832242147 - - PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Jatropha curcas]
14 Hb_089140_050 0.0855516838 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
15 Hb_013358_070 0.0855982868 - - protein with unknown function [Ricinus communis]
16 Hb_000027_050 0.0860373593 - - PREDICTED: uncharacterized protein LOC105636933 isoform X1 [Jatropha curcas]
17 Hb_000377_050 0.0865675298 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
18 Hb_005053_010 0.0869162006 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
19 Hb_000035_410 0.0880394804 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
20 Hb_002784_010 0.0885328509 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_002631_140 Hb_002631_140 Hb_000082_070 Hb_000082_070 Hb_002631_140--Hb_000082_070 Hb_009771_110 Hb_009771_110 Hb_002631_140--Hb_009771_110 Hb_160459_040 Hb_160459_040 Hb_002631_140--Hb_160459_040 Hb_143489_010 Hb_143489_010 Hb_002631_140--Hb_143489_010 Hb_000261_030 Hb_000261_030 Hb_002631_140--Hb_000261_030 Hb_001789_040 Hb_001789_040 Hb_002631_140--Hb_001789_040 Hb_000035_170 Hb_000035_170 Hb_000082_070--Hb_000035_170 Hb_000082_070--Hb_160459_040 Hb_162275_040 Hb_162275_040 Hb_000082_070--Hb_162275_040 Hb_000086_440 Hb_000086_440 Hb_000082_070--Hb_000086_440 Hb_000082_070--Hb_009771_110 Hb_006618_090 Hb_006618_090 Hb_009771_110--Hb_006618_090 Hb_005053_010 Hb_005053_010 Hb_009771_110--Hb_005053_010 Hb_009771_110--Hb_160459_040 Hb_007929_080 Hb_007929_080 Hb_009771_110--Hb_007929_080 Hb_002571_030 Hb_002571_030 Hb_009771_110--Hb_002571_030 Hb_000523_080 Hb_000523_080 Hb_009771_110--Hb_000523_080 Hb_160459_040--Hb_005053_010 Hb_012053_080 Hb_012053_080 Hb_160459_040--Hb_012053_080 Hb_160459_040--Hb_000261_030 Hb_028872_070 Hb_028872_070 Hb_160459_040--Hb_028872_070 Hb_143489_020 Hb_143489_020 Hb_143489_010--Hb_143489_020 Hb_006573_170 Hb_006573_170 Hb_143489_010--Hb_006573_170 Hb_003124_100 Hb_003124_100 Hb_143489_010--Hb_003124_100 Hb_018118_010 Hb_018118_010 Hb_143489_010--Hb_018118_010 Hb_000025_710 Hb_000025_710 Hb_143489_010--Hb_000025_710 Hb_000740_100 Hb_000740_100 Hb_000261_030--Hb_000740_100 Hb_000035_410 Hb_000035_410 Hb_000261_030--Hb_000035_410 Hb_001235_230 Hb_001235_230 Hb_000261_030--Hb_001235_230 Hb_003124_160 Hb_003124_160 Hb_000261_030--Hb_003124_160 Hb_004453_110 Hb_004453_110 Hb_000261_030--Hb_004453_110 Hb_002329_040 Hb_002329_040 Hb_000261_030--Hb_002329_040 Hb_000608_300 Hb_000608_300 Hb_001789_040--Hb_000608_300 Hb_005402_040 Hb_005402_040 Hb_001789_040--Hb_005402_040 Hb_004306_030 Hb_004306_030 Hb_001789_040--Hb_004306_030 Hb_027472_220 Hb_027472_220 Hb_001789_040--Hb_027472_220 Hb_001789_040--Hb_000025_710
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.20288 12.3645 11.033 7.78877 12.748 15.7081
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.38909 4.01018 5.13989 11.5519 15.9406

CAGE analysis