Hb_002631_180

Information

Type transcription factor
Description TF Family: NF-YC
Location Contig2631: 148507-150698
Sequence    

Annotation

kegg
ID rcu:RCOM_1574650
description ccaat-binding transcription factor, putative
nr
ID XP_012087361.1
description PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
swissprot
ID Q8LCG7
description Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=2 SV=2
trembl
ID A0A067JQF0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22608 PE=4 SV=1
Gene Ontology
ID GO:0016602
description nuclear transcription factor y subunit c-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27470: 148242-150621 , PASA_asmbl_27471: 150158-150504
cDNA
(Sanger)
(ID:Location)		 038_A13.ab1: 148659-150618

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002631_180 0.0 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
2 Hb_000922_040 0.0898811591 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
3 Hb_002016_080 0.0913548178 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
4 Hb_000136_350 0.0917172 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
5 Hb_002239_050 0.0925460205 - - PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
6 Hb_163256_020 0.0949658401 - - fructokinase [Manihot esculenta]
7 Hb_003994_260 0.1002085798 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
8 Hb_001222_080 0.1014267576 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
9 Hb_002232_060 0.1030629323 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
10 Hb_000465_070 0.104021976 - - PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Jatropha curcas]
11 Hb_003020_150 0.1084763141 - - tropinone reductase, putative [Ricinus communis]
12 Hb_000210_120 0.1086687667 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
13 Hb_008232_010 0.1090977659 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
14 Hb_104265_040 0.1098608898 - - conserved hypothetical protein [Ricinus communis]
15 Hb_015183_060 0.1106610194 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
16 Hb_007850_080 0.1118749277 - - PREDICTED: auxilin-like protein 1 isoform X1 [Jatropha curcas]
17 Hb_000847_060 0.1119818057 - - hypothetical protein [Jatropha curcas]
18 Hb_000982_080 0.1124694017 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
19 Hb_006256_030 0.1140509289 - - PREDICTED: putative cyclic nucleotide-gated ion channel 18 [Jatropha curcas]
20 Hb_003098_020 0.1141511356 - - 40S ribosomal protein S5B [Hevea brasiliensis]

Gene co-expression network

sample Hb_002631_180 Hb_002631_180 Hb_000922_040 Hb_000922_040 Hb_002631_180--Hb_000922_040 Hb_002016_080 Hb_002016_080 Hb_002631_180--Hb_002016_080 Hb_000136_350 Hb_000136_350 Hb_002631_180--Hb_000136_350 Hb_002239_050 Hb_002239_050 Hb_002631_180--Hb_002239_050 Hb_163256_020 Hb_163256_020 Hb_002631_180--Hb_163256_020 Hb_003994_260 Hb_003994_260 Hb_002631_180--Hb_003994_260 Hb_005269_080 Hb_005269_080 Hb_000922_040--Hb_005269_080 Hb_000384_120 Hb_000384_120 Hb_000922_040--Hb_000384_120 Hb_001222_080 Hb_001222_080 Hb_000922_040--Hb_001222_080 Hb_000922_040--Hb_002016_080 Hb_000701_100 Hb_000701_100 Hb_000922_040--Hb_000701_100 Hb_001410_060 Hb_001410_060 Hb_000922_040--Hb_001410_060 Hb_013405_140 Hb_013405_140 Hb_002016_080--Hb_013405_140 Hb_011485_020 Hb_011485_020 Hb_002016_080--Hb_011485_020 Hb_000673_020 Hb_000673_020 Hb_002016_080--Hb_000673_020 Hb_000413_280 Hb_000413_280 Hb_002016_080--Hb_000413_280 Hb_003783_030 Hb_003783_030 Hb_002016_080--Hb_003783_030 Hb_186982_040 Hb_186982_040 Hb_000136_350--Hb_186982_040 Hb_003098_020 Hb_003098_020 Hb_000136_350--Hb_003098_020 Hb_000136_260 Hb_000136_260 Hb_000136_350--Hb_000136_260 Hb_000538_120 Hb_000538_120 Hb_000136_350--Hb_000538_120 Hb_000377_120 Hb_000377_120 Hb_000136_350--Hb_000377_120 Hb_000419_020 Hb_000419_020 Hb_000136_350--Hb_000419_020 Hb_000847_060 Hb_000847_060 Hb_002239_050--Hb_000847_060 Hb_002239_050--Hb_000419_020 Hb_000155_160 Hb_000155_160 Hb_002239_050--Hb_000155_160 Hb_002239_050--Hb_163256_020 Hb_000465_070 Hb_000465_070 Hb_002239_050--Hb_000465_070 Hb_004324_090 Hb_004324_090 Hb_163256_020--Hb_004324_090 Hb_000465_300 Hb_000465_300 Hb_163256_020--Hb_000465_300 Hb_006256_030 Hb_006256_030 Hb_163256_020--Hb_006256_030 Hb_158445_010 Hb_158445_010 Hb_163256_020--Hb_158445_010 Hb_022318_020 Hb_022318_020 Hb_163256_020--Hb_022318_020 Hb_000310_020 Hb_000310_020 Hb_163256_020--Hb_000310_020 Hb_000069_420 Hb_000069_420 Hb_003994_260--Hb_000069_420 Hb_000483_260 Hb_000483_260 Hb_003994_260--Hb_000483_260 Hb_000258_260 Hb_000258_260 Hb_003994_260--Hb_000258_260 Hb_010812_120 Hb_010812_120 Hb_003994_260--Hb_010812_120 Hb_003994_260--Hb_004324_090 Hb_000603_080 Hb_000603_080 Hb_003994_260--Hb_000603_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.00659 19.6618 13.0562 23.304 6.91795 11.1844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.0594 51.6171 28.0509 30.7911 22.0386

CAGE analysis