Hb_002631_210

Information

Type -
Description -
Location Contig2631: 162210-171629
Sequence    

Annotation

kegg
ID rcu:RCOM_1574680
description serine/threonine protein kinase, putative (EC:2.7.10.2)
nr
ID XP_012087366.1
description PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
swissprot
ID Q9FPR3
description Serine/threonine-protein kinase EDR1 OS=Arabidopsis thaliana GN=EDR1 PE=1 SV=1
trembl
ID A0A067JM62
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22611 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27476: 162160-171703
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002631_210 0.0 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
2 Hb_011883_020 0.0631402371 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
3 Hb_002686_140 0.0648659577 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
4 Hb_001691_200 0.0668608426 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
5 Hb_023344_160 0.0671502026 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
6 Hb_005074_020 0.0720451687 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
7 Hb_005408_030 0.0754403004 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
8 Hb_005977_070 0.0756309175 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
9 Hb_002042_050 0.0759335694 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
10 Hb_001723_100 0.0760719709 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
11 Hb_011618_070 0.0766630158 - - NMDA receptor-regulated protein [Medicago truncatula]
12 Hb_000347_300 0.0772768941 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
13 Hb_000206_160 0.0780576711 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
14 Hb_000059_240 0.0790860083 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
15 Hb_001828_170 0.0794803075 - - PREDICTED: protein TPLATE [Jatropha curcas]
16 Hb_002272_030 0.0800432009 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
17 Hb_006100_020 0.0817173128 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
18 Hb_000009_410 0.0822788856 transcription factor TF Family: SET hypothetical protein POPTR_0007s12130g [Populus trichocarpa]
19 Hb_000243_260 0.0822975566 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
20 Hb_020178_040 0.0842637454 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002631_210 Hb_002631_210 Hb_011883_020 Hb_011883_020 Hb_002631_210--Hb_011883_020 Hb_002686_140 Hb_002686_140 Hb_002631_210--Hb_002686_140 Hb_001691_200 Hb_001691_200 Hb_002631_210--Hb_001691_200 Hb_023344_160 Hb_023344_160 Hb_002631_210--Hb_023344_160 Hb_005074_020 Hb_005074_020 Hb_002631_210--Hb_005074_020 Hb_005408_030 Hb_005408_030 Hb_002631_210--Hb_005408_030 Hb_011883_020--Hb_005074_020 Hb_027506_010 Hb_027506_010 Hb_011883_020--Hb_027506_010 Hb_004208_050 Hb_004208_050 Hb_011883_020--Hb_004208_050 Hb_004096_110 Hb_004096_110 Hb_011883_020--Hb_004096_110 Hb_011883_020--Hb_001691_200 Hb_002276_040 Hb_002276_040 Hb_002686_140--Hb_002276_040 Hb_000080_110 Hb_000080_110 Hb_002686_140--Hb_000080_110 Hb_000347_300 Hb_000347_300 Hb_002686_140--Hb_000347_300 Hb_009615_160 Hb_009615_160 Hb_002686_140--Hb_009615_160 Hb_022425_060 Hb_022425_060 Hb_002686_140--Hb_022425_060 Hb_001691_200--Hb_004208_050 Hb_002609_080 Hb_002609_080 Hb_001691_200--Hb_002609_080 Hb_005181_050 Hb_005181_050 Hb_001691_200--Hb_005181_050 Hb_000270_170 Hb_000270_170 Hb_001691_200--Hb_000270_170 Hb_005977_070 Hb_005977_070 Hb_023344_160--Hb_005977_070 Hb_004204_010 Hb_004204_010 Hb_023344_160--Hb_004204_010 Hb_001723_100 Hb_001723_100 Hb_023344_160--Hb_001723_100 Hb_023344_160--Hb_001691_200 Hb_171554_040 Hb_171554_040 Hb_023344_160--Hb_171554_040 Hb_005074_020--Hb_000080_110 Hb_027760_060 Hb_027760_060 Hb_005074_020--Hb_027760_060 Hb_005074_020--Hb_009615_160 Hb_005074_020--Hb_002276_040 Hb_011925_020 Hb_011925_020 Hb_005074_020--Hb_011925_020 Hb_000009_410 Hb_000009_410 Hb_005408_030--Hb_000009_410 Hb_001648_020 Hb_001648_020 Hb_005408_030--Hb_001648_020 Hb_001951_170 Hb_001951_170 Hb_005408_030--Hb_001951_170 Hb_005186_040 Hb_005186_040 Hb_005408_030--Hb_005186_040 Hb_011021_050 Hb_011021_050 Hb_005408_030--Hb_011021_050 Hb_000934_210 Hb_000934_210 Hb_005408_030--Hb_000934_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5829 32.3057 19.9608 23.2992 11.5108 10.4469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.39408 12.4622 19.799 28.2528 28.7733

CAGE analysis