Hb_002631_240

Information

Type -
Description -
Location Contig2631: 189153-198616
Sequence    

Annotation

kegg
ID pop:POPTR_0019s01320g
description terpene synthase/cyclase family protein
nr
ID BAJ53219.1
description JHL17M24.3 [Jatropha curcas]
swissprot
ID B9RI00
description Probable terpene synthase 6 OS=Ricinus communis GN=TPS6 PE=3 SV=1
trembl
ID E6NUA9
description JHL17M24.3 protein OS=Jatropha curcas GN=JHL17M24.3 PE=4 SV=1
Gene Ontology
ID GO:0000287
description probable terpene synthase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27477: 189187-195725 , PASA_asmbl_27479: 197095-197876 , PASA_asmbl_27480: 197159-197876
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002631_240 0.0 - - JHL17M24.3 [Jatropha curcas]
2 Hb_006907_060 0.0617916639 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
3 Hb_011671_260 0.0618764207 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
4 Hb_073973_090 0.063867513 - - Aminotransferase ybdL, putative [Ricinus communis]
5 Hb_001703_040 0.0658144702 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
6 Hb_000537_100 0.0721838551 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
7 Hb_005946_040 0.0738617375 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
8 Hb_000035_090 0.0749901117 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
9 Hb_000788_030 0.0769616419 - - PREDICTED: dynamin-2A [Jatropha curcas]
10 Hb_000028_520 0.0781110294 - - hypothetical protein L484_025125 [Morus notabilis]
11 Hb_000003_780 0.0791359858 - - hexokinase [Manihot esculenta]
12 Hb_012438_030 0.0796446135 - - PREDICTED: protein sym-1 [Jatropha curcas]
13 Hb_007741_110 0.0797764419 - - -
14 Hb_000061_180 0.0798053289 - - exonuclease, putative [Ricinus communis]
15 Hb_156850_100 0.0813007638 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
16 Hb_160271_010 0.0828631164 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
17 Hb_001882_010 0.0831462544 - - -
18 Hb_002218_020 0.0837601675 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
19 Hb_087313_010 0.0848257523 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002316_140 0.0862287094 - - PREDICTED: rac-like GTP-binding protein 3 [Populus euphratica]

Gene co-expression network

sample Hb_002631_240 Hb_002631_240 Hb_006907_060 Hb_006907_060 Hb_002631_240--Hb_006907_060 Hb_011671_260 Hb_011671_260 Hb_002631_240--Hb_011671_260 Hb_073973_090 Hb_073973_090 Hb_002631_240--Hb_073973_090 Hb_001703_040 Hb_001703_040 Hb_002631_240--Hb_001703_040 Hb_000537_100 Hb_000537_100 Hb_002631_240--Hb_000537_100 Hb_005946_040 Hb_005946_040 Hb_002631_240--Hb_005946_040 Hb_000941_100 Hb_000941_100 Hb_006907_060--Hb_000941_100 Hb_003053_110 Hb_003053_110 Hb_006907_060--Hb_003053_110 Hb_006907_060--Hb_073973_090 Hb_008705_020 Hb_008705_020 Hb_006907_060--Hb_008705_020 Hb_001195_770 Hb_001195_770 Hb_006907_060--Hb_001195_770 Hb_003266_030 Hb_003266_030 Hb_011671_260--Hb_003266_030 Hb_011671_260--Hb_073973_090 Hb_000167_110 Hb_000167_110 Hb_011671_260--Hb_000167_110 Hb_011671_260--Hb_006907_060 Hb_004965_110 Hb_004965_110 Hb_011671_260--Hb_004965_110 Hb_000035_090 Hb_000035_090 Hb_073973_090--Hb_000035_090 Hb_000023_360 Hb_000023_360 Hb_073973_090--Hb_000023_360 Hb_049575_010 Hb_049575_010 Hb_073973_090--Hb_049575_010 Hb_073973_090--Hb_000537_100 Hb_000788_030 Hb_000788_030 Hb_001703_040--Hb_000788_030 Hb_012438_030 Hb_012438_030 Hb_001703_040--Hb_012438_030 Hb_087313_010 Hb_087313_010 Hb_001703_040--Hb_087313_010 Hb_001504_010 Hb_001504_010 Hb_001703_040--Hb_001504_010 Hb_000120_890 Hb_000120_890 Hb_001703_040--Hb_000120_890 Hb_029622_120 Hb_029622_120 Hb_000537_100--Hb_029622_120 Hb_000537_100--Hb_005946_040 Hb_002316_140 Hb_002316_140 Hb_000537_100--Hb_002316_140 Hb_001178_010 Hb_001178_010 Hb_000537_100--Hb_001178_010 Hb_005162_110 Hb_005162_110 Hb_005946_040--Hb_005162_110 Hb_002876_300 Hb_002876_300 Hb_005946_040--Hb_002876_300 Hb_005946_040--Hb_029622_120 Hb_007558_090 Hb_007558_090 Hb_005946_040--Hb_007558_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5518 16.9905 45.9077 29.2 15.6663 12.7756
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.6493 19.7902 18.0383 13.6514 39.455

CAGE analysis