Hb_002631_260

Information

Type -
Description -
Location Contig2631: 228545-232094
Sequence    

Annotation

kegg
ID rcu:RCOM_1574800
description proteasome subunit alpha type, putative (EC:3.4.25.1)
nr
ID XP_012087375.1
description PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
swissprot
ID O23708
description Proteasome subunit alpha type-2-A OS=Arabidopsis thaliana GN=PAB1 PE=1 SV=1
trembl
ID A0A067JZW5
description Proteasome subunit alpha type OS=Jatropha curcas GN=JCGZ_22619 PE=3 SV=1
Gene Ontology
ID GO:0019773
description proteasome subunit alpha type-2-a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002631_260 0.0 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
2 Hb_000049_050 0.0805319285 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
3 Hb_138585_040 0.0899694278 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
4 Hb_002324_010 0.0943027291 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
5 Hb_000260_790 0.0970176506 - - NADH dehydrogenase 1 alpha subcomplex subunit 12 isoform 1 [Theobroma cacao]
6 Hb_001410_060 0.1133139163 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
7 Hb_003880_040 0.1146812492 - - hypothetical protein POPTR_0001s30770g [Populus trichocarpa]
8 Hb_000292_060 0.1194483245 - - transporter, putative [Ricinus communis]
9 Hb_145880_020 0.1196066678 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
10 Hb_005045_070 0.1208890805 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
11 Hb_004659_060 0.1209805347 - - RAS-related GTP-binding family protein [Populus trichocarpa]
12 Hb_077399_010 0.1221049756 - - hypothetical protein POPTR_0003s09910g [Populus trichocarpa]
13 Hb_148209_010 0.1221383957 - - RAS-related GTP-binding family protein [Populus trichocarpa]
14 Hb_000563_200 0.1246809516 - - hypothetical protein JCGZ_18930 [Jatropha curcas]
15 Hb_000574_130 0.1248971916 - - calcineurin-like protein [Hevea brasiliensis]
16 Hb_001935_150 0.125779814 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
17 Hb_005278_040 0.126742329 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
18 Hb_003376_190 0.1288074394 - - syntaxin, putative [Ricinus communis]
19 Hb_000384_120 0.1308295907 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
20 Hb_003894_080 0.1311713128 - - PREDICTED: protein cornichon homolog 4 [Vitis vinifera]

Gene co-expression network

sample Hb_002631_260 Hb_002631_260 Hb_000049_050 Hb_000049_050 Hb_002631_260--Hb_000049_050 Hb_138585_040 Hb_138585_040 Hb_002631_260--Hb_138585_040 Hb_002324_010 Hb_002324_010 Hb_002631_260--Hb_002324_010 Hb_000260_790 Hb_000260_790 Hb_002631_260--Hb_000260_790 Hb_001410_060 Hb_001410_060 Hb_002631_260--Hb_001410_060 Hb_003880_040 Hb_003880_040 Hb_002631_260--Hb_003880_040 Hb_000049_050--Hb_138585_040 Hb_000049_050--Hb_000260_790 Hb_000707_020 Hb_000707_020 Hb_000049_050--Hb_000707_020 Hb_001172_100 Hb_001172_100 Hb_000049_050--Hb_001172_100 Hb_005045_070 Hb_005045_070 Hb_000049_050--Hb_005045_070 Hb_138585_040--Hb_001172_100 Hb_138585_040--Hb_002324_010 Hb_000384_120 Hb_000384_120 Hb_138585_040--Hb_000384_120 Hb_005278_040 Hb_005278_040 Hb_138585_040--Hb_005278_040 Hb_003376_190 Hb_003376_190 Hb_002324_010--Hb_003376_190 Hb_002324_010--Hb_005045_070 Hb_002324_010--Hb_000384_120 Hb_002324_010--Hb_001172_100 Hb_072922_020 Hb_072922_020 Hb_002324_010--Hb_072922_020 Hb_077399_010 Hb_077399_010 Hb_000260_790--Hb_077399_010 Hb_001195_490 Hb_001195_490 Hb_000260_790--Hb_001195_490 Hb_000975_230 Hb_000975_230 Hb_000260_790--Hb_000975_230 Hb_000260_790--Hb_138585_040 Hb_000377_120 Hb_000377_120 Hb_001410_060--Hb_000377_120 Hb_000563_200 Hb_000563_200 Hb_001410_060--Hb_000563_200 Hb_000922_040 Hb_000922_040 Hb_001410_060--Hb_000922_040 Hb_001410_060--Hb_003880_040 Hb_005306_070 Hb_005306_070 Hb_001410_060--Hb_005306_070 Hb_005269_080 Hb_005269_080 Hb_001410_060--Hb_005269_080 Hb_003880_040--Hb_000563_200 Hb_000016_170 Hb_000016_170 Hb_003880_040--Hb_000016_170 Hb_000574_130 Hb_000574_130 Hb_003880_040--Hb_000574_130 Hb_003291_020 Hb_003291_020 Hb_003880_040--Hb_003291_020 Hb_005307_050 Hb_005307_050 Hb_003880_040--Hb_005307_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.17239 2.59482 5.8234 33.2415 3.04864 11.1833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.6586 40.5393 21.6406 13.9608 7.96136

CAGE analysis