Hb_002631_280

Information

Type -
Description -
Location Contig2631: 248542-252109
Sequence    

Annotation

kegg
ID mtr:MTR_5g092700
description Bi-ubiquitin
nr
ID XP_010064065.1
description PREDICTED: ubiquitin isoform X2 [Eucalyptus grandis]
swissprot
ID P0C031
description Ubiquitin-NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=2 SV=2
trembl
ID A0A059BZF9
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F04448 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ubiquitin-nedd8-like protein rub2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27488: 250552-252187
cDNA
(Sanger)
(ID:Location)		 047_M14.ab1: 250650-252187

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002631_280 0.0 - - PREDICTED: ubiquitin isoform X2 [Eucalyptus grandis]
2 Hb_005784_040 0.0840822283 - - PREDICTED: uncharacterized protein LOC105645160 isoform X1 [Jatropha curcas]
3 Hb_000003_540 0.1063315888 - - PREDICTED: homeobox-leucine zipper protein ATHB-15 [Jatropha curcas]
4 Hb_000384_070 0.1093498616 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000538_240 0.1106473364 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
6 Hb_011671_480 0.1150274959 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000086_170 0.1167564756 - - PREDICTED: serine/threonine-protein kinase 19 [Jatropha curcas]
8 Hb_004607_090 0.1176170483 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
9 Hb_010534_010 0.1178942758 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
10 Hb_003567_030 0.119602247 - - PREDICTED: nifU-like protein 4, mitochondrial [Jatropha curcas]
11 Hb_013738_020 0.1201511449 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
12 Hb_002245_030 0.1203380758 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
13 Hb_001911_040 0.1210720417 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
14 Hb_139294_010 0.1217220291 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000705_170 0.1230486569 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Jatropha curcas]
16 Hb_084247_010 0.123054559 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001221_220 0.1236371784 - - PREDICTED: deoxycytidylate deaminase isoform X1 [Jatropha curcas]
18 Hb_000161_040 0.1245564946 - - PREDICTED: protein EI24 homolog [Jatropha curcas]
19 Hb_012796_020 0.1247546226 - - PREDICTED: ADP-ribosylation factor 1 [Prunus mume]
20 Hb_000670_050 0.1254524404 transcription factor TF Family: MYB hypothetical protein JCGZ_16088 [Jatropha curcas]

Gene co-expression network

sample Hb_002631_280 Hb_002631_280 Hb_005784_040 Hb_005784_040 Hb_002631_280--Hb_005784_040 Hb_000003_540 Hb_000003_540 Hb_002631_280--Hb_000003_540 Hb_000384_070 Hb_000384_070 Hb_002631_280--Hb_000384_070 Hb_000538_240 Hb_000538_240 Hb_002631_280--Hb_000538_240 Hb_011671_480 Hb_011671_480 Hb_002631_280--Hb_011671_480 Hb_000086_170 Hb_000086_170 Hb_002631_280--Hb_000086_170 Hb_139294_010 Hb_139294_010 Hb_005784_040--Hb_139294_010 Hb_000116_450 Hb_000116_450 Hb_005784_040--Hb_000116_450 Hb_005784_040--Hb_000003_540 Hb_001357_150 Hb_001357_150 Hb_005784_040--Hb_001357_150 Hb_001278_100 Hb_001278_100 Hb_005784_040--Hb_001278_100 Hb_000670_050 Hb_000670_050 Hb_000003_540--Hb_000670_050 Hb_000245_080 Hb_000245_080 Hb_000003_540--Hb_000245_080 Hb_002344_130 Hb_002344_130 Hb_000003_540--Hb_002344_130 Hb_181385_010 Hb_181385_010 Hb_000003_540--Hb_181385_010 Hb_002995_050 Hb_002995_050 Hb_000384_070--Hb_002995_050 Hb_002042_150 Hb_002042_150 Hb_000384_070--Hb_002042_150 Hb_001489_110 Hb_001489_110 Hb_000384_070--Hb_001489_110 Hb_002045_070 Hb_002045_070 Hb_000384_070--Hb_002045_070 Hb_004607_090 Hb_004607_090 Hb_000384_070--Hb_004607_090 Hb_002133_020 Hb_002133_020 Hb_000384_070--Hb_002133_020 Hb_005463_050 Hb_005463_050 Hb_000538_240--Hb_005463_050 Hb_000538_240--Hb_011671_480 Hb_002232_040 Hb_002232_040 Hb_000538_240--Hb_002232_040 Hb_001221_220 Hb_001221_220 Hb_000538_240--Hb_001221_220 Hb_001911_040 Hb_001911_040 Hb_000538_240--Hb_001911_040 Hb_001829_040 Hb_001829_040 Hb_011671_480--Hb_001829_040 Hb_011671_480--Hb_001911_040 Hb_000260_720 Hb_000260_720 Hb_011671_480--Hb_000260_720 Hb_002983_080 Hb_002983_080 Hb_011671_480--Hb_002983_080 Hb_000331_090 Hb_000331_090 Hb_011671_480--Hb_000331_090 Hb_000270_310 Hb_000270_310 Hb_000086_170--Hb_000270_310 Hb_004312_010 Hb_004312_010 Hb_000086_170--Hb_004312_010 Hb_161574_020 Hb_161574_020 Hb_000086_170--Hb_161574_020 Hb_014720_120 Hb_014720_120 Hb_000086_170--Hb_014720_120 Hb_000336_210 Hb_000336_210 Hb_000086_170--Hb_000336_210 Hb_002272_050 Hb_002272_050 Hb_000086_170--Hb_002272_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.8452 41.8569 33.2526 81.9933 37.6919 31.874
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.8455 58.4292 23.3948 17.6905 22.0156

CAGE analysis