Hb_002631_300

Information

Type -
Description -
Location Contig2631: 266960-268495
Sequence    

Annotation

kegg
ID pop:POPTR_0007s08220g
description POPTRDRAFT_562863; hypothetical protein
nr
ID XP_012087377.1
description PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZX2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22624 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27489: 266957-268483
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002631_300 0.0 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
2 Hb_003178_020 0.1666090864 transcription factor TF Family: B3 conserved hypothetical protein [Ricinus communis]
3 Hb_001767_060 0.1805443423 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
4 Hb_000189_540 0.1954635075 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
5 Hb_101146_010 0.2035933895 - - PREDICTED: peregrin-like [Jatropha curcas]
6 Hb_003673_040 0.2054640719 - - dynamin family protein [Populus trichocarpa]
7 Hb_000152_210 0.208865185 - - conserved hypothetical protein [Ricinus communis]
8 Hb_098315_020 0.2165355008 - - hypothetical protein M569_15712 [Genlisea aurea]
9 Hb_009976_010 0.2186370575 - - PREDICTED: uncharacterized protein LOC105630216 [Jatropha curcas]
10 Hb_001376_060 0.2212315707 - - PREDICTED: probable serine/threonine-protein kinase abkC isoform X2 [Jatropha curcas]
11 Hb_006970_140 0.2229820914 - - PREDICTED: histone H3.2-like [Solanum lycopersicum]
12 Hb_001450_030 0.2239521976 - - PREDICTED: uncharacterized protein LOC105650827 [Jatropha curcas]
13 Hb_015807_160 0.2239999293 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
14 Hb_000155_090 0.2265976032 - - PREDICTED: glutaredoxin-C9 [Jatropha curcas]
15 Hb_052764_070 0.228356165 - - PREDICTED: uncharacterized protein LOC105649473 [Jatropha curcas]
16 Hb_007553_020 0.228594044 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001322_070 0.2301016265 - - protein with unknown function [Ricinus communis]
18 Hb_003462_160 0.2316598339 transcription factor TF Family: GNAT predicted protein [Arabidopsis lyrata subsp. lyrata]
19 Hb_089140_110 0.2326365059 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
20 Hb_000529_280 0.2347325517 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002631_300 Hb_002631_300 Hb_003178_020 Hb_003178_020 Hb_002631_300--Hb_003178_020 Hb_001767_060 Hb_001767_060 Hb_002631_300--Hb_001767_060 Hb_000189_540 Hb_000189_540 Hb_002631_300--Hb_000189_540 Hb_101146_010 Hb_101146_010 Hb_002631_300--Hb_101146_010 Hb_003673_040 Hb_003673_040 Hb_002631_300--Hb_003673_040 Hb_000152_210 Hb_000152_210 Hb_002631_300--Hb_000152_210 Hb_006970_140 Hb_006970_140 Hb_003178_020--Hb_006970_140 Hb_003178_020--Hb_001767_060 Hb_000173_050 Hb_000173_050 Hb_003178_020--Hb_000173_050 Hb_106552_070 Hb_106552_070 Hb_003178_020--Hb_106552_070 Hb_004449_040 Hb_004449_040 Hb_003178_020--Hb_004449_040 Hb_093458_010 Hb_093458_010 Hb_001767_060--Hb_093458_010 Hb_154038_020 Hb_154038_020 Hb_001767_060--Hb_154038_020 Hb_003602_060 Hb_003602_060 Hb_001767_060--Hb_003602_060 Hb_001450_030 Hb_001450_030 Hb_001767_060--Hb_001450_030 Hb_015807_160 Hb_015807_160 Hb_001767_060--Hb_015807_160 Hb_052764_070 Hb_052764_070 Hb_001767_060--Hb_052764_070 Hb_001322_070 Hb_001322_070 Hb_000189_540--Hb_001322_070 Hb_002686_180 Hb_002686_180 Hb_000189_540--Hb_002686_180 Hb_098315_020 Hb_098315_020 Hb_000189_540--Hb_098315_020 Hb_020805_060 Hb_020805_060 Hb_000189_540--Hb_020805_060 Hb_000155_090 Hb_000155_090 Hb_000189_540--Hb_000155_090 Hb_000189_540--Hb_000152_210 Hb_004117_190 Hb_004117_190 Hb_101146_010--Hb_004117_190 Hb_002960_090 Hb_002960_090 Hb_101146_010--Hb_002960_090 Hb_000757_130 Hb_000757_130 Hb_101146_010--Hb_000757_130 Hb_007741_130 Hb_007741_130 Hb_101146_010--Hb_007741_130 Hb_001114_170 Hb_001114_170 Hb_101146_010--Hb_001114_170 Hb_000046_310 Hb_000046_310 Hb_101146_010--Hb_000046_310 Hb_021079_010 Hb_021079_010 Hb_003673_040--Hb_021079_010 Hb_000330_030 Hb_000330_030 Hb_003673_040--Hb_000330_030 Hb_027298_030 Hb_027298_030 Hb_003673_040--Hb_027298_030 Hb_097218_020 Hb_097218_020 Hb_003673_040--Hb_097218_020 Hb_003181_060 Hb_003181_060 Hb_003673_040--Hb_003181_060 Hb_000152_210--Hb_001450_030 Hb_007441_170 Hb_007441_170 Hb_000152_210--Hb_007441_170 Hb_000152_210--Hb_015807_160 Hb_000352_200 Hb_000352_200 Hb_000152_210--Hb_000352_200 Hb_000152_210--Hb_000155_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.94969 14.0765 38.2839 35.6042 0.652466 0.578363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.2461 55.3461 1.98795 7.62177 10.3043

CAGE analysis