Hb_002636_080

Information

Type -
Description -
Location Contig2636: 88828-97855
Sequence    

Annotation

kegg
ID rcu:RCOM_1466340
description amino acid transporter, putative
nr
ID XP_012080480.1
description PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
swissprot
ID Q99624
description Sodium-coupled neutral amino acid transporter 3 OS=Homo sapiens GN=SLC38A3 PE=1 SV=1
trembl
ID A0A067KHU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11795 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable sodium-coupled neutral amino acid transporter 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27519: 88854-91167 , PASA_asmbl_27521: 88833-97870 , PASA_asmbl_27522: 88833-97870
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002636_080 0.0 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
2 Hb_002341_020 0.1292831942 - - PREDICTED: pyruvate decarboxylase 2 [Populus euphratica]
3 Hb_003442_070 0.1426148446 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
4 Hb_000390_140 0.1440428935 - - PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
5 Hb_000841_060 0.1487820109 transcription factor TF Family: ERF hypothetical protein POPTR_0015s06470g [Populus trichocarpa]
6 Hb_005285_030 0.1515722758 - - hypothetical protein JCGZ_20905 [Jatropha curcas]
7 Hb_034688_020 0.1575879126 - - PREDICTED: uncharacterized protein LOC105642050 [Jatropha curcas]
8 Hb_005137_060 0.165011416 - - -
9 Hb_001439_100 0.1650606141 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
10 Hb_001865_080 0.1652089255 - - enoyl-CoA hydratase/isomerase family protein [Populus trichocarpa]
11 Hb_000329_250 0.1673862767 - - PREDICTED: vesicle-associated protein 1-3 isoform X1 [Fragaria vesca subsp. vesca]
12 Hb_021888_050 0.1687591484 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
13 Hb_002042_130 0.16971879 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
14 Hb_000230_270 0.170604963 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
15 Hb_002851_020 0.1708345673 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
16 Hb_000096_130 0.170959143 - - hypothetical protein 23 [Hevea brasiliensis]
17 Hb_008226_080 0.1720356202 - - Protein LRP16, putative [Ricinus communis]
18 Hb_001969_080 0.1722595128 - - PREDICTED: uncharacterized protein LOC105634921 [Jatropha curcas]
19 Hb_000506_120 0.1731481651 - - hypothetical protein AALP_AA6G154200 [Arabis alpina]
20 Hb_001123_210 0.1739465655 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]

Gene co-expression network

sample Hb_002636_080 Hb_002636_080 Hb_002341_020 Hb_002341_020 Hb_002636_080--Hb_002341_020 Hb_003442_070 Hb_003442_070 Hb_002636_080--Hb_003442_070 Hb_000390_140 Hb_000390_140 Hb_002636_080--Hb_000390_140 Hb_000841_060 Hb_000841_060 Hb_002636_080--Hb_000841_060 Hb_005285_030 Hb_005285_030 Hb_002636_080--Hb_005285_030 Hb_034688_020 Hb_034688_020 Hb_002636_080--Hb_034688_020 Hb_001123_210 Hb_001123_210 Hb_002341_020--Hb_001123_210 Hb_021888_050 Hb_021888_050 Hb_002341_020--Hb_021888_050 Hb_000975_360 Hb_000975_360 Hb_002341_020--Hb_000975_360 Hb_116608_010 Hb_116608_010 Hb_002341_020--Hb_116608_010 Hb_002042_130 Hb_002042_130 Hb_002341_020--Hb_002042_130 Hb_007850_080 Hb_007850_080 Hb_003442_070--Hb_007850_080 Hb_003442_070--Hb_005285_030 Hb_001341_100 Hb_001341_100 Hb_003442_070--Hb_001341_100 Hb_001486_030 Hb_001486_030 Hb_003442_070--Hb_001486_030 Hb_165669_010 Hb_165669_010 Hb_003442_070--Hb_165669_010 Hb_008173_110 Hb_008173_110 Hb_003442_070--Hb_008173_110 Hb_000923_090 Hb_000923_090 Hb_000390_140--Hb_000923_090 Hb_008695_050 Hb_008695_050 Hb_000390_140--Hb_008695_050 Hb_000072_210 Hb_000072_210 Hb_000390_140--Hb_000072_210 Hb_002609_160 Hb_002609_160 Hb_000390_140--Hb_002609_160 Hb_004734_040 Hb_004734_040 Hb_000390_140--Hb_004734_040 Hb_000329_250 Hb_000329_250 Hb_000841_060--Hb_000329_250 Hb_104265_040 Hb_104265_040 Hb_000841_060--Hb_104265_040 Hb_005137_060 Hb_005137_060 Hb_000841_060--Hb_005137_060 Hb_000841_060--Hb_008695_050 Hb_001222_080 Hb_001222_080 Hb_000841_060--Hb_001222_080 Hb_000665_050 Hb_000665_050 Hb_005285_030--Hb_000665_050 Hb_003462_120 Hb_003462_120 Hb_005285_030--Hb_003462_120 Hb_002849_200 Hb_002849_200 Hb_005285_030--Hb_002849_200 Hb_003266_100 Hb_003266_100 Hb_005285_030--Hb_003266_100 Hb_028487_170 Hb_028487_170 Hb_005285_030--Hb_028487_170 Hb_001146_010 Hb_001146_010 Hb_034688_020--Hb_001146_010 Hb_000749_050 Hb_000749_050 Hb_034688_020--Hb_000749_050 Hb_000538_230 Hb_000538_230 Hb_034688_020--Hb_000538_230 Hb_005074_030 Hb_005074_030 Hb_034688_020--Hb_005074_030 Hb_000430_020 Hb_000430_020 Hb_034688_020--Hb_000430_020 Hb_000173_470 Hb_000173_470 Hb_034688_020--Hb_000173_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.51162 12.8639 2.51255 11.3267 2.35141 3.46335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.5742 14.7072 11.5844 13.1751 3.5846

CAGE analysis