Hb_002636_100

Information

Type -
Description -
Location Contig2636: 97892-107474
Sequence    

Annotation

kegg
ID rcu:RCOM_1466350
description DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor, putative
nr
ID XP_012080481.1
description PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
swissprot
ID Q8VWF8
description DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Nicotiana sylvestris GN=RPOT2 PE=2 SV=2
trembl
ID A0A067K8S5
description DNA-directed RNA polymerase OS=Jatropha curcas GN=JCGZ_11794 PE=3 SV=1
Gene Ontology
ID GO:0003677
description dna-directed rna polymerase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27524: 99572-99726 , PASA_asmbl_27525: 100030-102069 , PASA_asmbl_27526: 100592-102080 , PASA_asmbl_27527: 103249-103608 , PASA_asmbl_27528: 102843-103555 , PASA_asmbl_27529: 103618-105379 , PASA_asmbl_27530: 105538-106606 , PASA_asmbl_27531: 106919-107395
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002636_100 0.0 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
2 Hb_002263_040 0.0699389327 - - carbon catabolite repressor protein, putative [Ricinus communis]
3 Hb_008775_040 0.0701422064 - - Pentatricopeptide repeat (PPR) superfamily protein, putative [Theobroma cacao]
4 Hb_000264_320 0.070457867 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760 [Jatropha curcas]
5 Hb_002798_070 0.0738343499 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
6 Hb_000322_150 0.0738862178 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
7 Hb_000796_180 0.0758716426 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
8 Hb_002043_140 0.076115349 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
9 Hb_001828_130 0.0761594129 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
10 Hb_000977_120 0.0770595476 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]
11 Hb_000243_250 0.0820641282 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
12 Hb_012779_090 0.0821041995 - - PREDICTED: lipase member N [Jatropha curcas]
13 Hb_000441_070 0.0828303935 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
14 Hb_011491_010 0.0837328845 - - Protein YME1, putative [Ricinus communis]
15 Hb_002411_030 0.0845463761 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
16 Hb_012194_030 0.0856971672 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
17 Hb_000169_130 0.0860311443 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
18 Hb_000092_020 0.0865650589 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
19 Hb_000175_220 0.0867319336 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
20 Hb_000395_130 0.0885186017 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]

Gene co-expression network

sample Hb_002636_100 Hb_002636_100 Hb_002263_040 Hb_002263_040 Hb_002636_100--Hb_002263_040 Hb_008775_040 Hb_008775_040 Hb_002636_100--Hb_008775_040 Hb_000264_320 Hb_000264_320 Hb_002636_100--Hb_000264_320 Hb_002798_070 Hb_002798_070 Hb_002636_100--Hb_002798_070 Hb_000322_150 Hb_000322_150 Hb_002636_100--Hb_000322_150 Hb_000796_180 Hb_000796_180 Hb_002636_100--Hb_000796_180 Hb_000442_010 Hb_000442_010 Hb_002263_040--Hb_000442_010 Hb_002263_040--Hb_002798_070 Hb_002783_040 Hb_002783_040 Hb_002263_040--Hb_002783_040 Hb_000061_030 Hb_000061_030 Hb_002263_040--Hb_000061_030 Hb_000977_120 Hb_000977_120 Hb_002263_040--Hb_000977_120 Hb_008775_040--Hb_000264_320 Hb_000175_220 Hb_000175_220 Hb_008775_040--Hb_000175_220 Hb_003020_050 Hb_003020_050 Hb_008775_040--Hb_003020_050 Hb_000140_230 Hb_000140_230 Hb_008775_040--Hb_000140_230 Hb_000330_040 Hb_000330_040 Hb_008775_040--Hb_000330_040 Hb_000264_320--Hb_003020_050 Hb_000264_320--Hb_000140_230 Hb_000264_320--Hb_000175_220 Hb_015807_070 Hb_015807_070 Hb_000264_320--Hb_015807_070 Hb_012779_090 Hb_012779_090 Hb_002798_070--Hb_012779_090 Hb_000243_250 Hb_000243_250 Hb_002798_070--Hb_000243_250 Hb_002818_030 Hb_002818_030 Hb_002798_070--Hb_002818_030 Hb_002798_070--Hb_002783_040 Hb_162275_050 Hb_162275_050 Hb_002798_070--Hb_162275_050 Hb_002798_070--Hb_000442_010 Hb_076693_020 Hb_076693_020 Hb_000322_150--Hb_076693_020 Hb_000441_070 Hb_000441_070 Hb_000322_150--Hb_000441_070 Hb_000092_020 Hb_000092_020 Hb_000322_150--Hb_000092_020 Hb_011491_010 Hb_011491_010 Hb_000322_150--Hb_011491_010 Hb_001828_130 Hb_001828_130 Hb_000322_150--Hb_001828_130 Hb_000174_220 Hb_000174_220 Hb_000796_180--Hb_000174_220 Hb_000103_100 Hb_000103_100 Hb_000796_180--Hb_000103_100 Hb_000139_090 Hb_000139_090 Hb_000796_180--Hb_000139_090 Hb_000796_180--Hb_000092_020 Hb_000169_130 Hb_000169_130 Hb_000796_180--Hb_000169_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.81461 14.6568 5.88976 3.18759 7.60085 7.39692
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.29176 6.87527 8.40059 7.01906 5.85589

CAGE analysis