Hb_002636_110

Information

Type -
Description -
Location Contig2636: 109134-115421
Sequence    

Annotation

kegg
ID pop:POPTR_0008s11190g
description POPTRDRAFT_564455; heat shock family protein
nr
ID XP_012478819.1
description PREDICTED: heat shock protein 83-like isoform X2 [Gossypium raimondii]
swissprot
ID P02828
description Heat shock protein 83 OS=Drosophila melanogaster GN=Hsp83 PE=1 SV=1
trembl
ID A0A0D2RFF9
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G148100 PE=4 SV=1
Gene Ontology
ID GO:0005739
description heat shock protein 83

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27532: 108830-115375
cDNA
(Sanger)
(ID:Location)		 006_J20.ab1: 113740-115366 , 017_J12.ab1: 113779-115366 , 034_F15.ab1: 113539-115366

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002636_110 0.0 - - PREDICTED: heat shock protein 83-like isoform X2 [Gossypium raimondii]
2 Hb_003119_080 0.076704054 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
3 Hb_002600_060 0.0771329692 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
4 Hb_065408_010 0.0826250501 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
5 Hb_001789_040 0.0838626215 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
6 Hb_002909_120 0.0875011853 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
7 Hb_000608_300 0.0881842944 - - PREDICTED: protein KRI1 homolog [Jatropha curcas]
8 Hb_000260_560 0.0916049007 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Jatropha curcas]
9 Hb_000083_070 0.0921140527 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
10 Hb_000573_060 0.0935731256 - - PREDICTED: eukaryotic translation initiation factor 2D isoform X1 [Jatropha curcas]
11 Hb_000714_040 0.0938443034 - - PREDICTED: uncharacterized protein LOC105634664 isoform X2 [Jatropha curcas]
12 Hb_011609_150 0.0947379073 - - PREDICTED: HEAT repeat-containing protein 5B [Jatropha curcas]
13 Hb_001244_150 0.0950530544 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
14 Hb_001133_030 0.0955266722 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
15 Hb_005211_020 0.0958004061 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
16 Hb_000086_150 0.0970633331 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X1 [Jatropha curcas]
17 Hb_013405_160 0.0970634243 - - PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]
18 Hb_000925_090 0.0977540761 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
19 Hb_003805_050 0.0996551235 - - -
20 Hb_000086_690 0.0997864191 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002636_110 Hb_002636_110 Hb_003119_080 Hb_003119_080 Hb_002636_110--Hb_003119_080 Hb_002600_060 Hb_002600_060 Hb_002636_110--Hb_002600_060 Hb_065408_010 Hb_065408_010 Hb_002636_110--Hb_065408_010 Hb_001789_040 Hb_001789_040 Hb_002636_110--Hb_001789_040 Hb_002909_120 Hb_002909_120 Hb_002636_110--Hb_002909_120 Hb_000608_300 Hb_000608_300 Hb_002636_110--Hb_000608_300 Hb_003119_080--Hb_002909_120 Hb_011609_150 Hb_011609_150 Hb_003119_080--Hb_011609_150 Hb_000406_020 Hb_000406_020 Hb_003119_080--Hb_000406_020 Hb_000086_690 Hb_000086_690 Hb_003119_080--Hb_000086_690 Hb_003211_040 Hb_003211_040 Hb_003119_080--Hb_003211_040 Hb_000046_190 Hb_000046_190 Hb_003119_080--Hb_000046_190 Hb_000331_560 Hb_000331_560 Hb_002600_060--Hb_000331_560 Hb_000925_090 Hb_000925_090 Hb_002600_060--Hb_000925_090 Hb_005211_020 Hb_005211_020 Hb_002600_060--Hb_005211_020 Hb_001133_030 Hb_001133_030 Hb_002600_060--Hb_001133_030 Hb_005488_170 Hb_005488_170 Hb_002600_060--Hb_005488_170 Hb_000083_070 Hb_000083_070 Hb_002600_060--Hb_000083_070 Hb_007120_060 Hb_007120_060 Hb_065408_010--Hb_007120_060 Hb_065408_010--Hb_005211_020 Hb_001726_100 Hb_001726_100 Hb_065408_010--Hb_001726_100 Hb_065408_010--Hb_000925_090 Hb_001085_030 Hb_001085_030 Hb_065408_010--Hb_001085_030 Hb_001789_040--Hb_000608_300 Hb_005402_040 Hb_005402_040 Hb_001789_040--Hb_005402_040 Hb_004306_030 Hb_004306_030 Hb_001789_040--Hb_004306_030 Hb_027472_220 Hb_027472_220 Hb_001789_040--Hb_027472_220 Hb_000025_710 Hb_000025_710 Hb_001789_040--Hb_000025_710 Hb_002631_140 Hb_002631_140 Hb_001789_040--Hb_002631_140 Hb_002333_050 Hb_002333_050 Hb_002909_120--Hb_002333_050 Hb_002909_120--Hb_000046_190 Hb_009486_170 Hb_009486_170 Hb_002909_120--Hb_009486_170 Hb_188063_010 Hb_188063_010 Hb_002909_120--Hb_188063_010 Hb_002909_120--Hb_001133_030 Hb_000608_300--Hb_004306_030 Hb_000568_050 Hb_000568_050 Hb_000608_300--Hb_000568_050 Hb_000608_300--Hb_002600_060 Hb_000608_300--Hb_005211_020 Hb_012055_110 Hb_012055_110 Hb_000608_300--Hb_012055_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.3177 92.8657 47.5215 38.2784 96.8516 60.7993
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.1951 17.3262 32.6895 70.3858 125.494

CAGE analysis