Hb_002636_120

Information

Type -
Description -
Location Contig2636: 116723-119429
Sequence    

Annotation

kegg
ID rcu:RCOM_2153590
description Protein bem46, putative
nr
ID XP_002535116.1
description Protein bem46, putative [Ricinus communis]
swissprot
ID Q5ZJ01
description Alpha/beta hydrolase domain-containing protein 17B OS=Gallus gallus GN=ABHD17B PE=2 SV=1
trembl
ID B9TA47
description Protein bem46, putative OS=Ricinus communis GN=RCOM_2153590 PE=4 SV=1
Gene Ontology
ID GO:0016787
description alpha beta hydrolase domain-containing protein 17b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002636_120 0.0 - - Protein bem46, putative [Ricinus communis]
2 Hb_011618_110 0.032975852 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]
3 Hb_001975_110 0.0756065744 - - -
4 Hb_011853_020 0.0786307352 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
5 Hb_000003_370 0.0798976718 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
6 Hb_026218_010 0.0835428894 - - conserved hypothetical protein [Ricinus communis]
7 Hb_096027_010 0.085335124 - - ankyrin repeat-containing protein, putative [Ricinus communis]
8 Hb_000586_110 0.087711017 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
9 Hb_001136_160 0.089148788 - - catalytic, putative [Ricinus communis]
10 Hb_007122_020 0.0926839515 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
11 Hb_004202_020 0.0943603392 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001136_040 0.0963647917 - - amino acid transporter, putative [Ricinus communis]
13 Hb_001025_130 0.1021427047 - - PREDICTED: uncharacterized protein LOC105640342 [Jatropha curcas]
14 Hb_000005_290 0.1045700946 - - Serine carboxypeptidase, putative [Ricinus communis]
15 Hb_084812_010 0.1061973564 - - PREDICTED: putative RING-H2 finger protein ATL21B [Vitis vinifera]
16 Hb_040852_010 0.1066233879 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002092_060 0.1101735974 - - conserved hypothetical protein [Ricinus communis]
18 Hb_059275_010 0.1101859612 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
19 Hb_162472_010 0.1141640713 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001709_120 0.1148433359 - - hypothetical protein RCOM_1313640 [Ricinus communis]

Gene co-expression network

sample Hb_002636_120 Hb_002636_120 Hb_011618_110 Hb_011618_110 Hb_002636_120--Hb_011618_110 Hb_001975_110 Hb_001975_110 Hb_002636_120--Hb_001975_110 Hb_011853_020 Hb_011853_020 Hb_002636_120--Hb_011853_020 Hb_000003_370 Hb_000003_370 Hb_002636_120--Hb_000003_370 Hb_026218_010 Hb_026218_010 Hb_002636_120--Hb_026218_010 Hb_096027_010 Hb_096027_010 Hb_002636_120--Hb_096027_010 Hb_011618_110--Hb_011853_020 Hb_011618_110--Hb_096027_010 Hb_011618_110--Hb_000003_370 Hb_004202_020 Hb_004202_020 Hb_011618_110--Hb_004202_020 Hb_011618_110--Hb_001975_110 Hb_000005_290 Hb_000005_290 Hb_001975_110--Hb_000005_290 Hb_007122_020 Hb_007122_020 Hb_001975_110--Hb_007122_020 Hb_002309_020 Hb_002309_020 Hb_001975_110--Hb_002309_020 Hb_000317_380 Hb_000317_380 Hb_001975_110--Hb_000317_380 Hb_002783_100 Hb_002783_100 Hb_001975_110--Hb_002783_100 Hb_011853_020--Hb_096027_010 Hb_001136_040 Hb_001136_040 Hb_011853_020--Hb_001136_040 Hb_011853_020--Hb_000003_370 Hb_001136_160 Hb_001136_160 Hb_011853_020--Hb_001136_160 Hb_000003_370--Hb_004202_020 Hb_000003_370--Hb_001136_160 Hb_004223_060 Hb_004223_060 Hb_000003_370--Hb_004223_060 Hb_000586_110 Hb_000586_110 Hb_026218_010--Hb_000586_110 Hb_005731_040 Hb_005731_040 Hb_026218_010--Hb_005731_040 Hb_001025_130 Hb_001025_130 Hb_026218_010--Hb_001025_130 Hb_001775_140 Hb_001775_140 Hb_026218_010--Hb_001775_140 Hb_001709_120 Hb_001709_120 Hb_026218_010--Hb_001709_120 Hb_029977_030 Hb_029977_030 Hb_096027_010--Hb_029977_030 Hb_001766_130 Hb_001766_130 Hb_096027_010--Hb_001766_130 Hb_000230_300 Hb_000230_300 Hb_096027_010--Hb_000230_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.105843 0.65263 1.3174 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.394033

CAGE analysis