Hb_002636_160

Information

Type -
Description -
Location Contig2636: 136174-138968
Sequence    

Annotation

kegg
ID rcu:RCOM_1466530
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012067072.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At1g13630 [Jatropha curcas]
swissprot
ID Q9LMY5
description Putative pentatricopeptide repeat-containing protein At1g13630 OS=Arabidopsis thaliana GN=At1g13630 PE=2 SV=3
trembl
ID B9RLG0
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1466530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27536: 136459-136753 , PASA_asmbl_27537: 137078-137450
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002636_160 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g13630 [Jatropha curcas]
2 Hb_000032_290 0.0792055948 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
3 Hb_018838_030 0.0865182081 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000123_260 0.0917359882 - - PREDICTED: protein gar2 [Jatropha curcas]
5 Hb_001545_120 0.0954618437 - - PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
6 Hb_001258_040 0.0973017453 - - hypothetical protein JCGZ_12578 [Jatropha curcas]
7 Hb_000022_250 0.0976197258 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
8 Hb_003952_090 0.098160138 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
9 Hb_001488_330 0.1002727861 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
10 Hb_015292_030 0.1011580039 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
11 Hb_000635_250 0.1019290618 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
12 Hb_000373_280 0.1068169011 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
13 Hb_004600_040 0.1073735241 - - -
14 Hb_000406_220 0.1075619065 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
15 Hb_000251_130 0.1078938621 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
16 Hb_000085_050 0.1082742041 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_004128_060 0.108882447 - - PREDICTED: DNA topoisomerase 6 subunit A [Jatropha curcas]
18 Hb_120327_010 0.1101089054 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
19 Hb_007441_200 0.1103910439 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
20 Hb_000245_130 0.1106915671 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]

Gene co-expression network

sample Hb_002636_160 Hb_002636_160 Hb_000032_290 Hb_000032_290 Hb_002636_160--Hb_000032_290 Hb_018838_030 Hb_018838_030 Hb_002636_160--Hb_018838_030 Hb_000123_260 Hb_000123_260 Hb_002636_160--Hb_000123_260 Hb_001545_120 Hb_001545_120 Hb_002636_160--Hb_001545_120 Hb_001258_040 Hb_001258_040 Hb_002636_160--Hb_001258_040 Hb_000022_250 Hb_000022_250 Hb_002636_160--Hb_000022_250 Hb_000245_130 Hb_000245_130 Hb_000032_290--Hb_000245_130 Hb_000406_220 Hb_000406_220 Hb_000032_290--Hb_000406_220 Hb_000032_290--Hb_018838_030 Hb_181235_010 Hb_181235_010 Hb_000032_290--Hb_181235_010 Hb_000554_020 Hb_000554_020 Hb_000032_290--Hb_000554_020 Hb_006332_020 Hb_006332_020 Hb_000032_290--Hb_006332_020 Hb_000210_180 Hb_000210_180 Hb_018838_030--Hb_000210_180 Hb_015292_030 Hb_015292_030 Hb_018838_030--Hb_015292_030 Hb_000085_050 Hb_000085_050 Hb_018838_030--Hb_000085_050 Hb_063090_010 Hb_063090_010 Hb_018838_030--Hb_063090_010 Hb_007441_200 Hb_007441_200 Hb_018838_030--Hb_007441_200 Hb_004600_040 Hb_004600_040 Hb_000123_260--Hb_004600_040 Hb_007426_230 Hb_007426_230 Hb_000123_260--Hb_007426_230 Hb_000189_620 Hb_000189_620 Hb_000123_260--Hb_000189_620 Hb_000123_260--Hb_001545_120 Hb_003097_150 Hb_003097_150 Hb_000123_260--Hb_003097_150 Hb_004195_160 Hb_004195_160 Hb_000123_260--Hb_004195_160 Hb_002044_080 Hb_002044_080 Hb_001545_120--Hb_002044_080 Hb_000808_230 Hb_000808_230 Hb_001545_120--Hb_000808_230 Hb_011673_030 Hb_011673_030 Hb_001545_120--Hb_011673_030 Hb_006502_090 Hb_006502_090 Hb_001545_120--Hb_006502_090 Hb_001776_140 Hb_001776_140 Hb_001545_120--Hb_001776_140 Hb_001545_120--Hb_004600_040 Hb_022693_060 Hb_022693_060 Hb_001258_040--Hb_022693_060 Hb_000635_250 Hb_000635_250 Hb_001258_040--Hb_000635_250 Hb_001258_040--Hb_001545_120 Hb_000000_250 Hb_000000_250 Hb_001258_040--Hb_000000_250 Hb_001258_040--Hb_000022_250 Hb_007426_030 Hb_007426_030 Hb_001258_040--Hb_007426_030 Hb_002810_020 Hb_002810_020 Hb_000022_250--Hb_002810_020 Hb_007951_050 Hb_007951_050 Hb_000022_250--Hb_007951_050 Hb_000022_250--Hb_000554_020 Hb_001159_100 Hb_001159_100 Hb_000022_250--Hb_001159_100 Hb_010172_050 Hb_010172_050 Hb_000022_250--Hb_010172_050 Hb_001488_330 Hb_001488_330 Hb_000022_250--Hb_001488_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.64096 1.29139 0.227271 0.57122 1.52222 2.46713
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.27102 2.6254 1.69484 1.368 1.09252

CAGE analysis