Hb_002636_170

Information

Type -
Description -
Location Contig2636: 140262-142277
Sequence    

Annotation

kegg
ID rcu:RCOM_1466540
description DNA-3-methyladenine glycosylase, putative (EC:3.2.2.20)
nr
ID XP_002514580.1
description DNA-3-methyladenine glycosylase, putative [Ricinus communis]
swissprot
ID Q7VG78
description Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1
trembl
ID B9RLG1
description DNA-3-methyladenine glycosylase, putative OS=Ricinus communis GN=RCOM_1466540 PE=4 SV=1
Gene Ontology
ID GO:0008725
description glutamine amidotransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27538: 140618-142083
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002636_170 0.0 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]
2 Hb_000696_130 0.0250470763 - - nucleic acid binding protein, putative [Ricinus communis]
3 Hb_000422_090 0.0412349276 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002660_180 0.042873567 - - conserved hypothetical protein [Ricinus communis]
5 Hb_019953_010 0.0629902446 - - hypothetical protein CICLE_v10019877mg [Citrus clementina]
6 Hb_000037_150 0.0640811223 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
7 Hb_024074_030 0.0671152487 - - hypothetical protein CISIN_1g043166mg [Citrus sinensis]
8 Hb_000594_010 0.0737453738 - - PREDICTED: lysine histidine transporter-like 6 isoform X3 [Populus euphratica]
9 Hb_003788_030 0.0790636647 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
10 Hb_011912_010 0.0814721763 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
11 Hb_001307_180 0.0844897097 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
12 Hb_004846_110 0.0872217998 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
13 Hb_000684_190 0.0887889738 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
14 Hb_000581_010 0.0908978844 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
15 Hb_001856_250 0.0914300585 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
16 Hb_000487_350 0.0914829256 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002734_020 0.0917864535 - - PREDICTED: uncharacterized protein LOC105631540 [Jatropha curcas]
18 Hb_009164_010 0.0939704198 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
19 Hb_002785_020 0.0940609706 - - PREDICTED: laccase-4-like [Jatropha curcas]
20 Hb_003645_040 0.0950646892 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]

Gene co-expression network

sample Hb_002636_170 Hb_002636_170 Hb_000696_130 Hb_000696_130 Hb_002636_170--Hb_000696_130 Hb_000422_090 Hb_000422_090 Hb_002636_170--Hb_000422_090 Hb_002660_180 Hb_002660_180 Hb_002636_170--Hb_002660_180 Hb_019953_010 Hb_019953_010 Hb_002636_170--Hb_019953_010 Hb_000037_150 Hb_000037_150 Hb_002636_170--Hb_000037_150 Hb_024074_030 Hb_024074_030 Hb_002636_170--Hb_024074_030 Hb_000696_130--Hb_002660_180 Hb_000696_130--Hb_000422_090 Hb_000696_130--Hb_000037_150 Hb_000696_130--Hb_024074_030 Hb_000696_130--Hb_019953_010 Hb_000422_090--Hb_002660_180 Hb_000684_190 Hb_000684_190 Hb_000422_090--Hb_000684_190 Hb_002734_020 Hb_002734_020 Hb_000422_090--Hb_002734_020 Hb_001856_250 Hb_001856_250 Hb_000422_090--Hb_001856_250 Hb_002660_180--Hb_024074_030 Hb_002660_180--Hb_000037_150 Hb_001307_180 Hb_001307_180 Hb_002660_180--Hb_001307_180 Hb_033149_010 Hb_033149_010 Hb_019953_010--Hb_033149_010 Hb_000594_010 Hb_000594_010 Hb_019953_010--Hb_000594_010 Hb_006634_120 Hb_006634_120 Hb_019953_010--Hb_006634_120 Hb_019953_010--Hb_000422_090 Hb_011912_010 Hb_011912_010 Hb_000037_150--Hb_011912_010 Hb_000037_150--Hb_024074_030 Hb_001477_050 Hb_001477_050 Hb_000037_150--Hb_001477_050 Hb_004846_110 Hb_004846_110 Hb_000037_150--Hb_004846_110 Hb_024074_030--Hb_001477_050 Hb_024074_030--Hb_001307_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0658573 0.760742 1.7375 99.102 0.04843 0.0340307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0946134 34.2511

CAGE analysis