Hb_002639_040

Information

Type -
Description -
Location Contig2639: 32502-43446
Sequence    

Annotation

kegg
ID cit:102628718
description T-complex protein 1 subunit beta-like
nr
ID XP_012073695.1
description PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
swissprot
ID Q940P8
description T-complex protein 1 subunit beta OS=Arabidopsis thaliana GN=CCT2 PE=1 SV=1
trembl
ID A0A0A0LHR3
description Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000330 PE=3 SV=1
Gene Ontology
ID GO:0005618
description t-complex protein 1 subunit beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27551: 33290-37118 , PASA_asmbl_27552: 34587-35091 , PASA_asmbl_27553: 37625-43433 , PASA_asmbl_27554: 41455-41692
cDNA
(Sanger)
(ID:Location)		 050_M07.ab1: 34272-37118

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002639_040 0.0 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
2 Hb_000103_290 0.0762502794 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
3 Hb_027506_010 0.0825984832 - - PREDICTED: cullin-4 [Jatropha curcas]
4 Hb_000363_290 0.0897054506 - - fimbrin, putative [Ricinus communis]
5 Hb_011819_020 0.0906948168 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
6 Hb_000406_210 0.0908066815 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
7 Hb_000409_050 0.0912835583 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
8 Hb_000811_060 0.0936587517 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
9 Hb_005489_040 0.0937517667 - - PREDICTED: cullin-1 [Jatropha curcas]
10 Hb_073171_070 0.0960043725 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
11 Hb_000206_160 0.0960673158 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
12 Hb_159809_060 0.0966499273 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
13 Hb_048476_080 0.097014515 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
14 Hb_006100_020 0.0984018469 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
15 Hb_009288_020 0.0989155238 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
16 Hb_060980_010 0.0997472305 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
17 Hb_001587_030 0.0999634201 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
18 Hb_188281_040 0.0999771596 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
19 Hb_003758_010 0.1003357849 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]
20 Hb_000009_030 0.1006872977 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002639_040 Hb_002639_040 Hb_000103_290 Hb_000103_290 Hb_002639_040--Hb_000103_290 Hb_027506_010 Hb_027506_010 Hb_002639_040--Hb_027506_010 Hb_000363_290 Hb_000363_290 Hb_002639_040--Hb_000363_290 Hb_011819_020 Hb_011819_020 Hb_002639_040--Hb_011819_020 Hb_000406_210 Hb_000406_210 Hb_002639_040--Hb_000406_210 Hb_000409_050 Hb_000409_050 Hb_002639_040--Hb_000409_050 Hb_048476_080 Hb_048476_080 Hb_000103_290--Hb_048476_080 Hb_016172_030 Hb_016172_030 Hb_000103_290--Hb_016172_030 Hb_000954_010 Hb_000954_010 Hb_000103_290--Hb_000954_010 Hb_060980_010 Hb_060980_010 Hb_000103_290--Hb_060980_010 Hb_000103_290--Hb_027506_010 Hb_024650_080 Hb_024650_080 Hb_000103_290--Hb_024650_080 Hb_027506_010--Hb_060980_010 Hb_027506_010--Hb_016172_030 Hb_000206_160 Hb_000206_160 Hb_027506_010--Hb_000206_160 Hb_003758_010 Hb_003758_010 Hb_027506_010--Hb_003758_010 Hb_027506_010--Hb_000409_050 Hb_065500_020 Hb_065500_020 Hb_027506_010--Hb_065500_020 Hb_002042_050 Hb_002042_050 Hb_000363_290--Hb_002042_050 Hb_001014_070 Hb_001014_070 Hb_000363_290--Hb_001014_070 Hb_000703_190 Hb_000703_190 Hb_000363_290--Hb_000703_190 Hb_000567_230 Hb_000567_230 Hb_000363_290--Hb_000567_230 Hb_001817_170 Hb_001817_170 Hb_000363_290--Hb_001817_170 Hb_000243_260 Hb_000243_260 Hb_000363_290--Hb_000243_260 Hb_002890_130 Hb_002890_130 Hb_011819_020--Hb_002890_130 Hb_000261_480 Hb_000261_480 Hb_011819_020--Hb_000261_480 Hb_000317_100 Hb_000317_100 Hb_011819_020--Hb_000317_100 Hb_002749_060 Hb_002749_060 Hb_011819_020--Hb_002749_060 Hb_003280_020 Hb_003280_020 Hb_011819_020--Hb_003280_020 Hb_005215_010 Hb_005215_010 Hb_011819_020--Hb_005215_010 Hb_005846_050 Hb_005846_050 Hb_000406_210--Hb_005846_050 Hb_001159_060 Hb_001159_060 Hb_000406_210--Hb_001159_060 Hb_000815_300 Hb_000815_300 Hb_000406_210--Hb_000815_300 Hb_008289_040 Hb_008289_040 Hb_000406_210--Hb_008289_040 Hb_000406_210--Hb_000103_290 Hb_002552_040 Hb_002552_040 Hb_000406_210--Hb_002552_040 Hb_005489_040 Hb_005489_040 Hb_000409_050--Hb_005489_040 Hb_006189_020 Hb_006189_020 Hb_000409_050--Hb_006189_020 Hb_000773_040 Hb_000773_040 Hb_000409_050--Hb_000773_040 Hb_000409_050--Hb_016172_030 Hb_000409_050--Hb_060980_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.93508 20.2073 18.0524 19.697 18.6258 8.21895
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.92776 11.9776 11.7298 24.0857 28.3681

CAGE analysis