Hb_002639_050

Information

Type -
Description -
Location Contig2639: 48862-53779
Sequence    

Annotation

kegg
ID rcu:RCOM_1600150
description multicopper oxidase, putative (EC:1.10.3.3)
nr
ID XP_002510630.1
description multicopper oxidase, putative [Ricinus communis]
swissprot
ID Q00624
description L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1
trembl
ID B9R8I7
description Multicopper oxidase, putative OS=Ricinus communis GN=RCOM_1600150 PE=4 SV=1
Gene Ontology
ID GO:0005507
description l-ascorbate oxidase homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27555: 48691-53751 , PASA_asmbl_27556: 49520-53751
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002639_050 0.0 - - multicopper oxidase, putative [Ricinus communis]
2 Hb_001195_550 0.0964281954 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
3 Hb_001054_040 0.102125499 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
4 Hb_002301_400 0.1117226469 - - structural constituent of cell wall, putative [Ricinus communis]
5 Hb_001159_090 0.1133597263 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
6 Hb_006196_030 0.1149667262 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
7 Hb_000300_190 0.1157230594 - - PREDICTED: uncharacterized protein LOC105632566 [Jatropha curcas]
8 Hb_000996_040 0.1160136575 - - hypothetical protein POPTR_0003s12500g [Populus trichocarpa]
9 Hb_006120_210 0.1169678054 - - gibberellin 20-oxidase, putative [Ricinus communis]
10 Hb_006120_130 0.1173741827 - - -
11 Hb_003055_080 0.1222528956 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Jatropha curcas]
12 Hb_003747_250 0.1241353696 - - PREDICTED: potassium transporter 7 isoform X2 [Elaeis guineensis]
13 Hb_000809_130 0.124205057 - - PREDICTED: peroxidase 10 isoform X3 [Jatropha curcas]
14 Hb_001828_110 0.1261543766 - - PREDICTED: lysine histidine transporter 1-like [Tarenaya hassleriana]
15 Hb_002518_220 0.1266050452 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
16 Hb_000375_260 0.1304050684 - - cyanohydrin UDP-glucosyltransferase UGT85K4 [Manihot esculenta]
17 Hb_001307_020 0.1314113715 - - electron carrier, putative [Ricinus communis]
18 Hb_012404_020 0.1314559143 - - conserved hypothetical protein [Ricinus communis]
19 Hb_143629_120 0.13349406 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
20 Hb_128196_010 0.1350366841 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002639_050 Hb_002639_050 Hb_001195_550 Hb_001195_550 Hb_002639_050--Hb_001195_550 Hb_001054_040 Hb_001054_040 Hb_002639_050--Hb_001054_040 Hb_002301_400 Hb_002301_400 Hb_002639_050--Hb_002301_400 Hb_001159_090 Hb_001159_090 Hb_002639_050--Hb_001159_090 Hb_006196_030 Hb_006196_030 Hb_002639_050--Hb_006196_030 Hb_000300_190 Hb_000300_190 Hb_002639_050--Hb_000300_190 Hb_169893_010 Hb_169893_010 Hb_001195_550--Hb_169893_010 Hb_008686_010 Hb_008686_010 Hb_001195_550--Hb_008686_010 Hb_070498_010 Hb_070498_010 Hb_001195_550--Hb_070498_010 Hb_001195_550--Hb_002301_400 Hb_001195_550--Hb_001159_090 Hb_022092_110 Hb_022092_110 Hb_001054_040--Hb_022092_110 Hb_002311_280 Hb_002311_280 Hb_001054_040--Hb_002311_280 Hb_003266_090 Hb_003266_090 Hb_001054_040--Hb_003266_090 Hb_012404_020 Hb_012404_020 Hb_001054_040--Hb_012404_020 Hb_002518_220 Hb_002518_220 Hb_001054_040--Hb_002518_220 Hb_002301_400--Hb_070498_010 Hb_128196_010 Hb_128196_010 Hb_002301_400--Hb_128196_010 Hb_002301_400--Hb_012404_020 Hb_002301_400--Hb_001159_090 Hb_002301_400--Hb_006196_030 Hb_000375_260 Hb_000375_260 Hb_001159_090--Hb_000375_260 Hb_001157_050 Hb_001157_050 Hb_001159_090--Hb_001157_050 Hb_001159_090--Hb_006196_030 Hb_003750_120 Hb_003750_120 Hb_001159_090--Hb_003750_120 Hb_000359_100 Hb_000359_100 Hb_001159_090--Hb_000359_100 Hb_002490_060 Hb_002490_060 Hb_006196_030--Hb_002490_060 Hb_000996_070 Hb_000996_070 Hb_006196_030--Hb_000996_070 Hb_001794_040 Hb_001794_040 Hb_006196_030--Hb_001794_040 Hb_007123_010 Hb_007123_010 Hb_006196_030--Hb_007123_010 Hb_003992_280 Hb_003992_280 Hb_000300_190--Hb_003992_280 Hb_003055_080 Hb_003055_080 Hb_000300_190--Hb_003055_080 Hb_002965_060 Hb_002965_060 Hb_000300_190--Hb_002965_060 Hb_006120_130 Hb_006120_130 Hb_000300_190--Hb_006120_130 Hb_000300_190--Hb_000375_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.4135 26.4129 74.4931 77.3019 1.57543 0.501667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.205716 0.275176 0.43066 7.79914 20.7792

CAGE analysis