Hb_002639_080

Information

Type -
Description -
Location Contig2639: 71348-80314
Sequence    

Annotation

kegg
ID rcu:RCOM_1600180
description scythe/bat3, putative
nr
ID XP_012073690.1
description PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
swissprot
ID Q9Z1R2
description Large proline-rich protein BAG6 OS=Mus musculus GN=Bag6 PE=1 SV=1
trembl
ID A0A067KX49
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08136 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27560: 71418-80330 , PASA_asmbl_27562: 75009-75289
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002639_080 0.0 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
2 Hb_001188_020 0.0479061481 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X1 [Jatropha curcas]
3 Hb_041327_010 0.0550412216 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
4 Hb_071130_010 0.0563175483 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
5 Hb_004143_160 0.0642042086 - - SAB, putative [Ricinus communis]
6 Hb_000069_120 0.064771933 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
7 Hb_007632_010 0.0656161673 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
8 Hb_000261_480 0.0660441977 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
9 Hb_000340_490 0.0661587112 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
10 Hb_085781_020 0.0680533235 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
11 Hb_001341_180 0.0681097119 - - PREDICTED: transmembrane protein 209 [Jatropha curcas]
12 Hb_000537_050 0.0704670632 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
13 Hb_007818_010 0.0706765669 - - PREDICTED: transcriptional corepressor SEUSS-like isoform X2 [Gossypium raimondii]
14 Hb_004208_050 0.0717163676 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
15 Hb_004048_120 0.072196342 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
16 Hb_000412_010 0.0725496165 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_000230_260 0.0734845156 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
18 Hb_003060_060 0.0742435746 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
19 Hb_007994_010 0.0742832729 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 [Jatropha curcas]
20 Hb_005656_040 0.075758614 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002639_080 Hb_002639_080 Hb_001188_020 Hb_001188_020 Hb_002639_080--Hb_001188_020 Hb_041327_010 Hb_041327_010 Hb_002639_080--Hb_041327_010 Hb_071130_010 Hb_071130_010 Hb_002639_080--Hb_071130_010 Hb_004143_160 Hb_004143_160 Hb_002639_080--Hb_004143_160 Hb_000069_120 Hb_000069_120 Hb_002639_080--Hb_000069_120 Hb_007632_010 Hb_007632_010 Hb_002639_080--Hb_007632_010 Hb_005656_040 Hb_005656_040 Hb_001188_020--Hb_005656_040 Hb_001188_020--Hb_071130_010 Hb_043362_010 Hb_043362_010 Hb_001188_020--Hb_043362_010 Hb_007994_010 Hb_007994_010 Hb_001188_020--Hb_007994_010 Hb_000537_050 Hb_000537_050 Hb_001188_020--Hb_000537_050 Hb_012286_040 Hb_012286_040 Hb_041327_010--Hb_012286_040 Hb_000261_480 Hb_000261_480 Hb_041327_010--Hb_000261_480 Hb_000230_260 Hb_000230_260 Hb_041327_010--Hb_000230_260 Hb_041327_010--Hb_000069_120 Hb_041327_010--Hb_000537_050 Hb_071130_010--Hb_000230_260 Hb_085781_020 Hb_085781_020 Hb_071130_010--Hb_085781_020 Hb_071130_010--Hb_000069_120 Hb_071130_010--Hb_041327_010 Hb_004048_120 Hb_004048_120 Hb_004143_160--Hb_004048_120 Hb_000358_050 Hb_000358_050 Hb_004143_160--Hb_000358_050 Hb_004143_160--Hb_007994_010 Hb_002025_330 Hb_002025_330 Hb_004143_160--Hb_002025_330 Hb_135572_010 Hb_135572_010 Hb_004143_160--Hb_135572_010 Hb_000069_120--Hb_000230_260 Hb_017358_040 Hb_017358_040 Hb_000069_120--Hb_017358_040 Hb_000069_120--Hb_000537_050 Hb_000720_130 Hb_000720_130 Hb_007632_010--Hb_000720_130 Hb_000574_530 Hb_000574_530 Hb_007632_010--Hb_000574_530 Hb_007576_210 Hb_007576_210 Hb_007632_010--Hb_007576_210 Hb_009486_170 Hb_009486_170 Hb_007632_010--Hb_009486_170 Hb_002333_050 Hb_002333_050 Hb_007632_010--Hb_002333_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.7348 44.2628 17.7184 31.3796 29.4362 39.1112
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7746 17.1026 26.8737 55.6142 45.6303

CAGE analysis