Hb_002639_110

Information

Type -
Description -
Location Contig2639: 110861-114889
Sequence    

Annotation

kegg
ID vvi:100248789
description uncharacterized LOC100248789
nr
ID XP_010101308.1
description hypothetical protein L484_011673 [Morus notabilis]
swissprot
ID -
description -
trembl
ID W9RN34
description Uncharacterized protein OS=Morus notabilis GN=L484_011673 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27565: 111162-113243 , PASA_asmbl_27566: 111450-111843 , PASA_asmbl_27567: 111922-112350 , PASA_asmbl_27568: 114370-114918
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002639_110 0.0 - - hypothetical protein L484_011673 [Morus notabilis]
2 Hb_007472_090 0.0801229382 - - unnamed protein product [Coffea canephora]
3 Hb_002908_040 0.0823849818 - - DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative [Ricinus communis]
4 Hb_011485_060 0.0935096501 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
5 Hb_001223_010 0.096538013 - - PREDICTED: FGGY carbohydrate kinase domain-containing protein isoform X2 [Jatropha curcas]
6 Hb_000365_240 0.1020925048 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
7 Hb_002609_080 0.1044533144 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
8 Hb_004306_120 0.1094095784 - - DNA binding protein, putative [Ricinus communis]
9 Hb_001478_010 0.1095475329 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Jatropha curcas]
10 Hb_000922_030 0.1099592699 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
11 Hb_000110_270 0.1102622959 - - prp4, putative [Ricinus communis]
12 Hb_000007_010 0.1112398408 - - PREDICTED: protein PHYLLO, chloroplastic [Jatropha curcas]
13 Hb_000589_380 0.1124690015 - - Phosphoribosylformylglycinamidine synthase, putative [Ricinus communis]
14 Hb_000358_050 0.1137360769 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
15 Hb_155832_010 0.1141013831 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
16 Hb_001726_100 0.1155222739 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
17 Hb_156279_010 0.1155933026 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105641053 isoform X1 [Jatropha curcas]
18 Hb_000635_060 0.1167706586 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
19 Hb_003089_020 0.11681964 - - PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Jatropha curcas]
20 Hb_188281_040 0.1170682528 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]

Gene co-expression network

sample Hb_002639_110 Hb_002639_110 Hb_007472_090 Hb_007472_090 Hb_002639_110--Hb_007472_090 Hb_002908_040 Hb_002908_040 Hb_002639_110--Hb_002908_040 Hb_011485_060 Hb_011485_060 Hb_002639_110--Hb_011485_060 Hb_001223_010 Hb_001223_010 Hb_002639_110--Hb_001223_010 Hb_000365_240 Hb_000365_240 Hb_002639_110--Hb_000365_240 Hb_002609_080 Hb_002609_080 Hb_002639_110--Hb_002609_080 Hb_004208_050 Hb_004208_050 Hb_007472_090--Hb_004208_050 Hb_000922_030 Hb_000922_030 Hb_007472_090--Hb_000922_030 Hb_007472_090--Hb_002908_040 Hb_000358_050 Hb_000358_050 Hb_007472_090--Hb_000358_050 Hb_007441_160 Hb_007441_160 Hb_007472_090--Hb_007441_160 Hb_002908_040--Hb_001223_010 Hb_004306_120 Hb_004306_120 Hb_002908_040--Hb_004306_120 Hb_002805_210 Hb_002805_210 Hb_002908_040--Hb_002805_210 Hb_001691_200 Hb_001691_200 Hb_002908_040--Hb_001691_200 Hb_011485_060--Hb_000358_050 Hb_000890_070 Hb_000890_070 Hb_011485_060--Hb_000890_070 Hb_002213_020 Hb_002213_020 Hb_011485_060--Hb_002213_020 Hb_004048_120 Hb_004048_120 Hb_011485_060--Hb_004048_120 Hb_011485_060--Hb_004208_050 Hb_000059_240 Hb_000059_240 Hb_011485_060--Hb_000059_240 Hb_000589_380 Hb_000589_380 Hb_001223_010--Hb_000589_380 Hb_001223_010--Hb_007472_090 Hb_001223_010--Hb_011485_060 Hb_001726_100 Hb_001726_100 Hb_001223_010--Hb_001726_100 Hb_002055_040 Hb_002055_040 Hb_000365_240--Hb_002055_040 Hb_001163_060 Hb_001163_060 Hb_000365_240--Hb_001163_060 Hb_000365_240--Hb_000922_030 Hb_001157_240 Hb_001157_240 Hb_000365_240--Hb_001157_240 Hb_002539_070 Hb_002539_070 Hb_000365_240--Hb_002539_070 Hb_004218_190 Hb_004218_190 Hb_000365_240--Hb_004218_190 Hb_002609_080--Hb_004306_120 Hb_011021_050 Hb_011021_050 Hb_002609_080--Hb_011021_050 Hb_002609_080--Hb_001691_200 Hb_001377_100 Hb_001377_100 Hb_002609_080--Hb_001377_100 Hb_003849_280 Hb_003849_280 Hb_002609_080--Hb_003849_280 Hb_005181_050 Hb_005181_050 Hb_002609_080--Hb_005181_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.355513 0.534004 0.385667 0.329043 0.351391 0.317768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.380326 0.299011 0.42893 0.898591 1.30798

CAGE analysis