Hb_002639_140

Information

Type -
Description -
Location Contig2639: 133743-139227
Sequence    

Annotation

kegg
ID rcu:RCOM_1600450
description AMP dependent CoA ligase, putative (EC:1.13.12.7)
nr
ID XP_012073683.1
description PREDICTED: 4-coumarate--CoA ligase-like 5 [Jatropha curcas]
swissprot
ID Q84P21
description 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2
trembl
ID A0A067KL43
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08128 PE=4 SV=1
Gene Ontology
ID GO:0005777
description 4-coumarate-- ligase-like 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27573: 133826-139248 , PASA_asmbl_27574: 134055-134279
cDNA
(Sanger)
(ID:Location)		 015_H23r.ab1: 139607-141831 , 027_N08r.ab1: 138494-139245

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002639_140 0.0 - - PREDICTED: 4-coumarate--CoA ligase-like 5 [Jatropha curcas]
2 Hb_000080_120 0.0960234469 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
3 Hb_001322_140 0.1029908595 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
4 Hb_002780_020 0.1057071084 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 [Jatropha curcas]
5 Hb_003794_010 0.1069760227 - - PREDICTED: uncharacterized protein LOC105641013 [Jatropha curcas]
6 Hb_000627_250 0.1073435409 - - PREDICTED: uncharacterized protein LOC105632682 isoform X1 [Jatropha curcas]
7 Hb_000062_260 0.1076617246 - - PREDICTED: uncharacterized protein LOC105644756 [Jatropha curcas]
8 Hb_004970_190 0.1091994216 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
9 Hb_003029_070 0.1110513086 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000804_040 0.111325377 - - protein with unknown function [Ricinus communis]
11 Hb_001975_090 0.1144125277 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
12 Hb_001671_010 0.1152626844 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
13 Hb_004398_030 0.1166725738 - - PREDICTED: chloroplast processing peptidase [Jatropha curcas]
14 Hb_003929_110 0.1172336386 - - PREDICTED: probable GTP diphosphokinase CRSH, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_003939_050 0.1178779277 - - protein with unknown function [Ricinus communis]
16 Hb_006816_180 0.1182614109 - - -
17 Hb_002217_260 0.1186703093 - - PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas]
18 Hb_002163_040 0.1196348062 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008554_030 0.1198644212 - - PREDICTED: dnaJ homolog 1, mitochondrial-like [Jatropha curcas]
20 Hb_008221_180 0.1201301941 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002639_140 Hb_002639_140 Hb_000080_120 Hb_000080_120 Hb_002639_140--Hb_000080_120 Hb_001322_140 Hb_001322_140 Hb_002639_140--Hb_001322_140 Hb_002780_020 Hb_002780_020 Hb_002639_140--Hb_002780_020 Hb_003794_010 Hb_003794_010 Hb_002639_140--Hb_003794_010 Hb_000627_250 Hb_000627_250 Hb_002639_140--Hb_000627_250 Hb_000062_260 Hb_000062_260 Hb_002639_140--Hb_000062_260 Hb_002163_040 Hb_002163_040 Hb_000080_120--Hb_002163_040 Hb_002893_070 Hb_002893_070 Hb_000080_120--Hb_002893_070 Hb_000804_040 Hb_000804_040 Hb_000080_120--Hb_000804_040 Hb_000224_160 Hb_000224_160 Hb_000080_120--Hb_000224_160 Hb_000076_130 Hb_000076_130 Hb_000080_120--Hb_000076_130 Hb_012022_150 Hb_012022_150 Hb_000080_120--Hb_012022_150 Hb_001322_140--Hb_000804_040 Hb_001700_010 Hb_001700_010 Hb_001322_140--Hb_001700_010 Hb_001322_140--Hb_012022_150 Hb_000205_190 Hb_000205_190 Hb_001322_140--Hb_000205_190 Hb_000184_170 Hb_000184_170 Hb_001322_140--Hb_000184_170 Hb_001322_140--Hb_000224_160 Hb_012395_230 Hb_012395_230 Hb_002780_020--Hb_012395_230 Hb_004970_190 Hb_004970_190 Hb_002780_020--Hb_004970_190 Hb_000346_060 Hb_000346_060 Hb_002780_020--Hb_000346_060 Hb_001123_260 Hb_001123_260 Hb_002780_020--Hb_001123_260 Hb_000699_030 Hb_000699_030 Hb_002780_020--Hb_000699_030 Hb_007632_030 Hb_007632_030 Hb_002780_020--Hb_007632_030 Hb_000160_210 Hb_000160_210 Hb_003794_010--Hb_000160_210 Hb_000009_090 Hb_000009_090 Hb_003794_010--Hb_000009_090 Hb_007007_060 Hb_007007_060 Hb_003794_010--Hb_007007_060 Hb_001390_110 Hb_001390_110 Hb_003794_010--Hb_001390_110 Hb_007904_120 Hb_007904_120 Hb_003794_010--Hb_007904_120 Hb_002909_050 Hb_002909_050 Hb_003794_010--Hb_002909_050 Hb_000948_170 Hb_000948_170 Hb_000627_250--Hb_000948_170 Hb_031284_070 Hb_031284_070 Hb_000627_250--Hb_031284_070 Hb_021346_030 Hb_021346_030 Hb_000627_250--Hb_021346_030 Hb_000015_100 Hb_000015_100 Hb_000627_250--Hb_000015_100 Hb_001259_020 Hb_001259_020 Hb_000627_250--Hb_001259_020 Hb_025557_050 Hb_025557_050 Hb_000627_250--Hb_025557_050 Hb_006816_180 Hb_006816_180 Hb_000062_260--Hb_006816_180 Hb_000062_260--Hb_001700_010 Hb_002217_260 Hb_002217_260 Hb_000062_260--Hb_002217_260 Hb_009775_010 Hb_009775_010 Hb_000062_260--Hb_009775_010 Hb_004398_030 Hb_004398_030 Hb_000062_260--Hb_004398_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.6532 33.1765 45.7443 13.1596 41.5551 40.2881
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.2921 36.8588 38.6103 17.1742 72.3819

CAGE analysis