Hb_002640_040

Information

Type -
Description -
Location Contig2640: 72798-75560
Sequence    

Annotation

kegg
ID rcu:RCOM_0410590
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002532388.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9LSL9
description Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
trembl
ID B9T2B9
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0410590 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at5g65560

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002640_040 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_001014_150 0.120224068 - - zinc finger protein, putative [Ricinus communis]
3 Hb_003085_080 0.1571156412 - - nucleic acid binding protein, putative [Ricinus communis]
4 Hb_000661_230 0.1659657408 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X2 [Jatropha curcas]
5 Hb_001091_020 0.1717404202 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
6 Hb_000816_020 0.1718790325 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
7 Hb_006538_010 0.1782001361 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
8 Hb_082683_010 0.1847226225 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
9 Hb_029576_080 0.1916205653 - - Aspartic proteinase precursor, putative [Ricinus communis]
10 Hb_003847_170 0.1918099848 - - PREDICTED: trehalase isoform X1 [Jatropha curcas]
11 Hb_000215_250 0.1922048286 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
12 Hb_009193_060 0.1941154769 - - PREDICTED: ureide permease 1-like [Jatropha curcas]
13 Hb_017559_010 0.1945877456 - - hypothetical protein JCGZ_06093 [Jatropha curcas]
14 Hb_009785_010 0.1951487783 - - PREDICTED: uncharacterized protein LOC105648749 [Jatropha curcas]
15 Hb_010839_010 0.1966375821 - - receptor-kinase, putative [Ricinus communis]
16 Hb_003842_010 0.1975489131 - - receptor protein kinase, putative [Ricinus communis]
17 Hb_002811_020 0.1982767326 - - Cysteine synthase [Morus notabilis]
18 Hb_006788_150 0.1984826559 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000011_120 0.1999524512 - - PREDICTED: ATPase 10, plasma membrane-type-like [Populus euphratica]
20 Hb_005523_050 0.2003514215 - - hypothetical protein JCGZ_09175 [Jatropha curcas]

Gene co-expression network

sample Hb_002640_040 Hb_002640_040 Hb_001014_150 Hb_001014_150 Hb_002640_040--Hb_001014_150 Hb_003085_080 Hb_003085_080 Hb_002640_040--Hb_003085_080 Hb_000661_230 Hb_000661_230 Hb_002640_040--Hb_000661_230 Hb_001091_020 Hb_001091_020 Hb_002640_040--Hb_001091_020 Hb_000816_020 Hb_000816_020 Hb_002640_040--Hb_000816_020 Hb_006538_010 Hb_006538_010 Hb_002640_040--Hb_006538_010 Hb_001014_150--Hb_006538_010 Hb_001014_150--Hb_003085_080 Hb_006788_150 Hb_006788_150 Hb_001014_150--Hb_006788_150 Hb_001014_150--Hb_000661_230 Hb_010839_010 Hb_010839_010 Hb_001014_150--Hb_010839_010 Hb_004128_090 Hb_004128_090 Hb_003085_080--Hb_004128_090 Hb_002475_030 Hb_002475_030 Hb_003085_080--Hb_002475_030 Hb_003842_010 Hb_003842_010 Hb_003085_080--Hb_003842_010 Hb_000203_080 Hb_000203_080 Hb_003085_080--Hb_000203_080 Hb_003085_080--Hb_010839_010 Hb_025526_010 Hb_025526_010 Hb_000661_230--Hb_025526_010 Hb_000661_230--Hb_006788_150 Hb_006970_100 Hb_006970_100 Hb_000661_230--Hb_006970_100 Hb_003060_080 Hb_003060_080 Hb_000661_230--Hb_003060_080 Hb_000661_230--Hb_003085_080 Hb_029576_080 Hb_029576_080 Hb_000661_230--Hb_029576_080 Hb_117168_010 Hb_117168_010 Hb_001091_020--Hb_117168_010 Hb_000313_370 Hb_000313_370 Hb_001091_020--Hb_000313_370 Hb_005880_010 Hb_005880_010 Hb_001091_020--Hb_005880_010 Hb_000141_010 Hb_000141_010 Hb_001091_020--Hb_000141_010 Hb_002218_070 Hb_002218_070 Hb_001091_020--Hb_002218_070 Hb_002660_040 Hb_002660_040 Hb_001091_020--Hb_002660_040 Hb_082683_010 Hb_082683_010 Hb_000816_020--Hb_082683_010 Hb_006096_020 Hb_006096_020 Hb_000816_020--Hb_006096_020 Hb_001677_230 Hb_001677_230 Hb_000816_020--Hb_001677_230 Hb_002420_010 Hb_002420_010 Hb_000816_020--Hb_002420_010 Hb_033594_100 Hb_033594_100 Hb_000816_020--Hb_033594_100 Hb_000811_010 Hb_000811_010 Hb_000816_020--Hb_000811_010 Hb_006538_010--Hb_006788_150 Hb_005010_040 Hb_005010_040 Hb_006538_010--Hb_005010_040 Hb_005116_010 Hb_005116_010 Hb_006538_010--Hb_005116_010 Hb_009627_040 Hb_009627_040 Hb_006538_010--Hb_009627_040 Hb_006538_010--Hb_000661_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.120474 0.564336 0.319154 0.323411 0.0554817 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0655047 1.49658 0.584054

CAGE analysis