Hb_002641_020

Information

Type -
Description -
Location Contig2641: 71161-71793
Sequence    

Annotation

kegg
ID rcu:RCOM_0643640
description 3'-5' exonuclease, putative
nr
ID XP_002528093.1
description 3'-5' exonuclease, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SQ24
description 3'-5' exonuclease, putative OS=Ricinus communis GN=RCOM_0643640 PE=4 SV=1
Gene Ontology
ID GO:0004527
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27641: 71125-71500
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002641_020 0.0 - - 3'-5' exonuclease, putative [Ricinus communis]
2 Hb_000184_010 0.1057676555 - - mutt domain protein, putative [Ricinus communis]
3 Hb_000510_180 0.1369915903 - - unknown [Lotus japonicus]
4 Hb_001102_130 0.1393554939 transcription factor TF Family: PHD PREDICTED: protein Jade-1 [Populus euphratica]
5 Hb_001488_250 0.143091129 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001662_090 0.1445429686 - - PREDICTED: thiosulfate sulfurtransferase 16, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_001864_050 0.1478833376 - - chloroplast oxygen-evolving enhancer protein [Manihot esculenta]
8 Hb_003921_020 0.1500580211 - - hypothetical protein JCGZ_10628 [Jatropha curcas]
9 Hb_001006_150 0.1503425798 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
10 Hb_000115_020 0.1505593175 transcription factor TF Family: C2C2-CO-like zinc finger family protein [Populus trichocarpa]
11 Hb_000915_250 0.1508191763 - - chloroplast latex aldolase-like protein [Manihot esculenta]
12 Hb_000937_010 0.1509423704 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000625_080 0.1510771408 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
14 Hb_000281_120 0.1523516543 - - protein binding protein, putative [Ricinus communis]
15 Hb_000648_070 0.1524920799 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
16 Hb_003651_030 0.1531848847 - - lyase, putative [Ricinus communis]
17 Hb_002529_120 0.1535816878 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
18 Hb_002805_200 0.1539373932 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
19 Hb_000482_160 0.1546596815 - - hypothetical protein JCGZ_07670 [Jatropha curcas]
20 Hb_004306_090 0.1548980038 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002641_020 Hb_002641_020 Hb_000184_010 Hb_000184_010 Hb_002641_020--Hb_000184_010 Hb_000510_180 Hb_000510_180 Hb_002641_020--Hb_000510_180 Hb_001102_130 Hb_001102_130 Hb_002641_020--Hb_001102_130 Hb_001488_250 Hb_001488_250 Hb_002641_020--Hb_001488_250 Hb_001662_090 Hb_001662_090 Hb_002641_020--Hb_001662_090 Hb_001864_050 Hb_001864_050 Hb_002641_020--Hb_001864_050 Hb_000184_010--Hb_001488_250 Hb_005000_110 Hb_005000_110 Hb_000184_010--Hb_005000_110 Hb_002272_210 Hb_002272_210 Hb_000184_010--Hb_002272_210 Hb_000329_500 Hb_000329_500 Hb_000184_010--Hb_000329_500 Hb_001159_050 Hb_001159_050 Hb_000184_010--Hb_001159_050 Hb_000625_080 Hb_000625_080 Hb_000510_180--Hb_000625_080 Hb_013726_060 Hb_013726_060 Hb_000510_180--Hb_013726_060 Hb_002818_110 Hb_002818_110 Hb_000510_180--Hb_002818_110 Hb_008013_020 Hb_008013_020 Hb_000510_180--Hb_008013_020 Hb_006573_110 Hb_006573_110 Hb_000510_180--Hb_006573_110 Hb_009193_020 Hb_009193_020 Hb_000510_180--Hb_009193_020 Hb_000809_190 Hb_000809_190 Hb_001102_130--Hb_000809_190 Hb_080922_010 Hb_080922_010 Hb_001102_130--Hb_080922_010 Hb_000445_270 Hb_000445_270 Hb_001102_130--Hb_000445_270 Hb_124677_010 Hb_124677_010 Hb_001102_130--Hb_124677_010 Hb_002025_220 Hb_002025_220 Hb_001102_130--Hb_002025_220 Hb_004920_020 Hb_004920_020 Hb_001102_130--Hb_004920_020 Hb_023344_090 Hb_023344_090 Hb_001488_250--Hb_023344_090 Hb_000128_040 Hb_000128_040 Hb_001488_250--Hb_000128_040 Hb_001488_250--Hb_005000_110 Hb_001343_030 Hb_001343_030 Hb_001488_250--Hb_001343_030 Hb_000719_030 Hb_000719_030 Hb_001488_250--Hb_000719_030 Hb_146225_020 Hb_146225_020 Hb_001488_250--Hb_146225_020 Hb_002805_200 Hb_002805_200 Hb_001662_090--Hb_002805_200 Hb_001662_090--Hb_001864_050 Hb_005305_140 Hb_005305_140 Hb_001662_090--Hb_005305_140 Hb_006775_100 Hb_006775_100 Hb_001662_090--Hb_006775_100 Hb_001916_110 Hb_001916_110 Hb_001662_090--Hb_001916_110 Hb_000386_010 Hb_000386_010 Hb_001662_090--Hb_000386_010 Hb_001864_050--Hb_002805_200 Hb_001338_120 Hb_001338_120 Hb_001864_050--Hb_001338_120 Hb_001006_150 Hb_001006_150 Hb_001864_050--Hb_001006_150 Hb_000482_160 Hb_000482_160 Hb_001864_050--Hb_000482_160 Hb_000281_120 Hb_000281_120 Hb_001864_050--Hb_000281_120 Hb_001864_050--Hb_005305_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0797486 0.965252 0.160017 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0857249 0 0 0.986852

CAGE analysis