Hb_002641_090

Information

Type -
Description -
Location Contig2641: 151977-153003
Sequence    

Annotation

kegg
ID rcu:RCOM_1000860
description hypothetical protein
nr
ID XP_012084103.1
description PREDICTED: uncharacterized protein LOC105643559 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K7Z1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19019 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27664: 151765-153006
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002641_090 0.0 - - PREDICTED: uncharacterized protein LOC105643559 [Jatropha curcas]
2 Hb_163989_010 0.0528262948 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005389_030 0.0912509055 - - hypothetical protein VITISV_023348 [Vitis vinifera]
4 Hb_001369_510 0.0917184995 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
5 Hb_100953_010 0.0938826085 - - hypothetical protein JCGZ_10310 [Jatropha curcas]
6 Hb_003082_090 0.0983518017 - - hypothetical protein POPTR_0013s099451g, partial [Populus trichocarpa]
7 Hb_000028_450 0.0988968811 - - PREDICTED: monoglyceride lipase-like [Jatropha curcas]
8 Hb_005357_040 0.102361233 - - gibberellin 20-oxidase, putative [Ricinus communis]
9 Hb_002217_400 0.102717171 - - polynucleotidyl transferase, ribonuclease H-like protein [Arabidopsis thaliana]
10 Hb_165110_010 0.1055022353 - - PREDICTED: kunitz-type elastase inhibitor BrEI-like [Jatropha curcas]
11 Hb_007138_010 0.1056782958 - - PREDICTED: putative laccase-9 [Jatropha curcas]
12 Hb_070266_010 0.1073020581 - - LRR.XII-like protein, partial [Platanus x acerifolia]
13 Hb_002267_110 0.1094676159 - - -
14 Hb_000320_240 0.1124417357 - - multicopper oxidase, putative [Ricinus communis]
15 Hb_138585_070 0.115662394 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000617_160 0.1182261597 - - -
17 Hb_004598_020 0.1182791635 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
18 Hb_041332_010 0.1264571323 - - DNA binding protein, putative [Ricinus communis]
19 Hb_000732_200 0.1273047051 - - conserved hypothetical protein [Ricinus communis]
20 Hb_033691_010 0.1278914625 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002641_090 Hb_002641_090 Hb_163989_010 Hb_163989_010 Hb_002641_090--Hb_163989_010 Hb_005389_030 Hb_005389_030 Hb_002641_090--Hb_005389_030 Hb_001369_510 Hb_001369_510 Hb_002641_090--Hb_001369_510 Hb_100953_010 Hb_100953_010 Hb_002641_090--Hb_100953_010 Hb_003082_090 Hb_003082_090 Hb_002641_090--Hb_003082_090 Hb_000028_450 Hb_000028_450 Hb_002641_090--Hb_000028_450 Hb_163989_010--Hb_005389_030 Hb_163989_010--Hb_000028_450 Hb_005357_040 Hb_005357_040 Hb_163989_010--Hb_005357_040 Hb_163989_010--Hb_100953_010 Hb_163989_010--Hb_003082_090 Hb_005389_030--Hb_005357_040 Hb_005389_030--Hb_000028_450 Hb_005389_030--Hb_100953_010 Hb_002217_400 Hb_002217_400 Hb_005389_030--Hb_002217_400 Hb_007138_010 Hb_007138_010 Hb_005389_030--Hb_007138_010 Hb_138585_070 Hb_138585_070 Hb_005389_030--Hb_138585_070 Hb_001369_510--Hb_100953_010 Hb_001369_510--Hb_007138_010 Hb_001369_510--Hb_005389_030 Hb_001369_510--Hb_005357_040 Hb_001369_510--Hb_000028_450 Hb_033691_010 Hb_033691_010 Hb_001369_510--Hb_033691_010 Hb_100953_010--Hb_007138_010 Hb_100953_010--Hb_005357_040 Hb_100953_010--Hb_000028_450 Hb_073870_010 Hb_073870_010 Hb_100953_010--Hb_073870_010 Hb_003082_090--Hb_002217_400 Hb_003082_090--Hb_000028_450 Hb_003082_090--Hb_005357_040 Hb_003082_090--Hb_005389_030 Hb_004598_020 Hb_004598_020 Hb_003082_090--Hb_004598_020 Hb_000617_160 Hb_000617_160 Hb_003082_090--Hb_000617_160 Hb_000028_450--Hb_002217_400 Hb_000028_450--Hb_005357_040 Hb_000028_450--Hb_138585_070 Hb_000028_450--Hb_000617_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.101059 1.65376 5.02402 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.581564 0

CAGE analysis