Hb_002641_140

Information

Type -
Description -
Location Contig2641: 177082-182690
Sequence    

Annotation

kegg
ID rcu:RCOM_1000710
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_002519242.1
description protein phosphatase 2c, putative [Ricinus communis]
swissprot
ID Q0V7V2
description Probable protein phosphatase 2C 42 OS=Arabidopsis thaliana GN=At3g17090 PE=2 SV=1
trembl
ID B9RZS3
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_1000710 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 42

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27667: 176894-181192 , PASA_asmbl_27668: 179376-181177 , PASA_asmbl_27670: 178155-178291
cDNA
(Sanger)
(ID:Location)		 016_B05.ab1: 178597-181192 , 019_D20.ab1: 178567-181192 , 021_N16.ab1: 178567-181192

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002641_140 0.0 - - protein phosphatase 2c, putative [Ricinus communis]
2 Hb_008021_040 0.0664698396 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
3 Hb_000411_020 0.0773543315 - - cytochrome P450, putative [Ricinus communis]
4 Hb_189208_050 0.0780757275 - - PREDICTED: uncharacterized protein LOC105642694 isoform X2 [Jatropha curcas]
5 Hb_000098_260 0.0809835651 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
6 Hb_005357_120 0.086842241 transcription factor TF Family: MYB-related -
7 Hb_012787_060 0.0888208375 - - PREDICTED: glutathione S-transferase U17-like [Prunus mume]
8 Hb_000631_100 0.0904204466 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
9 Hb_001138_070 0.0963157477 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
10 Hb_001048_070 0.0997278481 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
11 Hb_000645_160 0.1007287629 - - protein translocase, putative [Ricinus communis]
12 Hb_000120_320 0.1009971017 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_149055_010 0.101250686 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
14 Hb_002888_100 0.1058188302 - - PREDICTED: uncharacterized protein LOC103699074, partial [Phoenix dactylifera]
15 Hb_001141_160 0.109907694 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
16 Hb_003656_090 0.110801377 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
17 Hb_001638_150 0.1109458087 - - acyltransferase, putative [Ricinus communis]
18 Hb_000365_430 0.1110907632 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
19 Hb_024868_010 0.1122767664 - - protein kinase, putative [Ricinus communis]
20 Hb_001269_400 0.1132083079 - - cinnamoyl-CoA reductase [Hevea brasiliensis]

Gene co-expression network

sample Hb_002641_140 Hb_002641_140 Hb_008021_040 Hb_008021_040 Hb_002641_140--Hb_008021_040 Hb_000411_020 Hb_000411_020 Hb_002641_140--Hb_000411_020 Hb_189208_050 Hb_189208_050 Hb_002641_140--Hb_189208_050 Hb_000098_260 Hb_000098_260 Hb_002641_140--Hb_000098_260 Hb_005357_120 Hb_005357_120 Hb_002641_140--Hb_005357_120 Hb_012787_060 Hb_012787_060 Hb_002641_140--Hb_012787_060 Hb_139461_010 Hb_139461_010 Hb_008021_040--Hb_139461_010 Hb_008021_040--Hb_189208_050 Hb_024868_010 Hb_024868_010 Hb_008021_040--Hb_024868_010 Hb_001048_070 Hb_001048_070 Hb_008021_040--Hb_001048_070 Hb_029142_040 Hb_029142_040 Hb_008021_040--Hb_029142_040 Hb_000631_100 Hb_000631_100 Hb_000411_020--Hb_000631_100 Hb_000411_020--Hb_189208_050 Hb_000411_020--Hb_000098_260 Hb_003216_140 Hb_003216_140 Hb_000411_020--Hb_003216_140 Hb_000411_020--Hb_005357_120 Hb_189208_050--Hb_003216_140 Hb_189208_050--Hb_000631_100 Hb_001247_090 Hb_001247_090 Hb_189208_050--Hb_001247_090 Hb_189208_050--Hb_024868_010 Hb_092975_010 Hb_092975_010 Hb_000098_260--Hb_092975_010 Hb_000365_430 Hb_000365_430 Hb_000098_260--Hb_000365_430 Hb_000742_130 Hb_000742_130 Hb_000098_260--Hb_000742_130 Hb_000645_160 Hb_000645_160 Hb_000098_260--Hb_000645_160 Hb_005357_120--Hb_000631_100 Hb_004079_100 Hb_004079_100 Hb_005357_120--Hb_004079_100 Hb_001638_150 Hb_001638_150 Hb_005357_120--Hb_001638_150 Hb_005357_120--Hb_008021_040 Hb_012787_060--Hb_001048_070 Hb_002888_100 Hb_002888_100 Hb_012787_060--Hb_002888_100 Hb_012787_060--Hb_000098_260 Hb_007479_080 Hb_007479_080 Hb_012787_060--Hb_007479_080 Hb_004634_030 Hb_004634_030 Hb_012787_060--Hb_004634_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.163155 9.79221 15.5856 27.4177 0.113173 0.0815544
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0382443 0 0 12.5345 7.55391

CAGE analysis