Hb_002641_160

Information

Type -
Description -
Location Contig2641: 198647-199747
Sequence    

Annotation

kegg
ID rcu:RCOM_1000700
description hypothetical protein
nr
ID XP_002519241.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LUQ5
description Probable ubiquitin-conjugating enzyme E2 25 OS=Arabidopsis thaliana GN=UBC25 PE=2 SV=1
trembl
ID B9RZS2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1000700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002641_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012760_090 0.0806764296 - - Aspartic proteinase-like protein 1 [Morus notabilis]
3 Hb_010050_020 0.0935813315 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
4 Hb_004218_130 0.1073069372 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
5 Hb_001545_130 0.1077514359 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
6 Hb_000309_030 0.1118006209 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
7 Hb_000000_480 0.1145312642 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
8 Hb_003430_080 0.1204224384 - - zinc finger protein, putative [Ricinus communis]
9 Hb_001221_390 0.1245432841 - - Phospholipase C 4 precursor, putative [Ricinus communis]
10 Hb_003929_180 0.1289025894 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g17430 isoform X1 [Glycine max]
11 Hb_000622_330 0.1326228258 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
12 Hb_034507_060 0.1328995833 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
13 Hb_000003_030 0.1344695152 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_004522_030 0.1346626183 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
15 Hb_001009_150 0.1367014574 - - Glyceraldehyde-3-phosphate dehydrogenase [Gossypium arboreum]
16 Hb_004297_090 0.1371739519 - - PREDICTED: DNA polymerase epsilon catalytic subunit A [Jatropha curcas]
17 Hb_000152_710 0.1373347728 - - PREDICTED: putative glycerol-3-phosphate transporter 1 [Jatropha curcas]
18 Hb_005694_180 0.1375525933 - - PREDICTED: cytochrome b5 [Jatropha curcas]
19 Hb_000638_060 0.1380585591 - - PREDICTED: probable methyltransferase PMT26 [Jatropha curcas]
20 Hb_000318_170 0.1387747907 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002641_160 Hb_002641_160 Hb_012760_090 Hb_012760_090 Hb_002641_160--Hb_012760_090 Hb_010050_020 Hb_010050_020 Hb_002641_160--Hb_010050_020 Hb_004218_130 Hb_004218_130 Hb_002641_160--Hb_004218_130 Hb_001545_130 Hb_001545_130 Hb_002641_160--Hb_001545_130 Hb_000309_030 Hb_000309_030 Hb_002641_160--Hb_000309_030 Hb_000000_480 Hb_000000_480 Hb_002641_160--Hb_000000_480 Hb_012760_090--Hb_010050_020 Hb_005333_080 Hb_005333_080 Hb_012760_090--Hb_005333_080 Hb_034507_060 Hb_034507_060 Hb_012760_090--Hb_034507_060 Hb_012760_090--Hb_004218_130 Hb_000318_170 Hb_000318_170 Hb_012760_090--Hb_000318_170 Hb_001221_390 Hb_001221_390 Hb_010050_020--Hb_001221_390 Hb_000622_330 Hb_000622_330 Hb_010050_020--Hb_000622_330 Hb_004522_030 Hb_004522_030 Hb_010050_020--Hb_004522_030 Hb_000012_400 Hb_000012_400 Hb_010050_020--Hb_000012_400 Hb_000098_180 Hb_000098_180 Hb_004218_130--Hb_000098_180 Hb_004218_130--Hb_001545_130 Hb_018845_010 Hb_018845_010 Hb_004218_130--Hb_018845_010 Hb_003929_180 Hb_003929_180 Hb_004218_130--Hb_003929_180 Hb_004218_130--Hb_000000_480 Hb_002739_120 Hb_002739_120 Hb_004218_130--Hb_002739_120 Hb_147245_010 Hb_147245_010 Hb_001545_130--Hb_147245_010 Hb_000003_030 Hb_000003_030 Hb_001545_130--Hb_000003_030 Hb_004109_050 Hb_004109_050 Hb_001545_130--Hb_004109_050 Hb_006351_020 Hb_006351_020 Hb_001545_130--Hb_006351_020 Hb_004032_210 Hb_004032_210 Hb_001545_130--Hb_004032_210 Hb_000116_240 Hb_000116_240 Hb_000309_030--Hb_000116_240 Hb_000261_310 Hb_000261_310 Hb_000309_030--Hb_000261_310 Hb_004883_020 Hb_004883_020 Hb_000309_030--Hb_004883_020 Hb_000309_030--Hb_000318_170 Hb_000309_030--Hb_010050_020 Hb_000590_070 Hb_000590_070 Hb_000309_030--Hb_000590_070 Hb_012762_040 Hb_012762_040 Hb_000000_480--Hb_012762_040 Hb_000000_480--Hb_000622_330 Hb_000000_480--Hb_000098_180 Hb_000928_120 Hb_000928_120 Hb_000000_480--Hb_000928_120 Hb_029253_010 Hb_029253_010 Hb_000000_480--Hb_029253_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.12377 0.598654 1.1259 1.61774 0.234283 0.0766073
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.213807 0.0560354 0.201941 0.817712 0.672069

CAGE analysis