Hb_002641_170

Information

Type -
Description -
Location Contig2641: 208917-210534
Sequence    

Annotation

kegg
ID rcu:RCOM_1000640
description zinc finger protein, putative
nr
ID XP_002519235.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID O23470
description GDSL esterase/lipase At4g16230 OS=Arabidopsis thaliana GN=At4g16230 PE=3 SV=2
trembl
ID B9RZR6
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1000640 PE=4 SV=1
Gene Ontology
ID GO:0004601
description gdsl esterase lipase at4g16230-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27675: 209502-210122
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002641_170 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_000367_110 0.1528467361 - - PREDICTED: monodehydroascorbate reductase, chloroplastic isoform X1 [Sesamum indicum]
3 Hb_003906_020 0.1974461137 - - PREDICTED: uncharacterized protein LOC105648535 [Jatropha curcas]
4 Hb_004218_100 0.2057702665 - - PREDICTED: DNA-directed RNA polymerase V subunit 5C [Jatropha curcas]
5 Hb_010866_020 0.2175695406 - - unnamed protein product [Vitis vinifera]
6 Hb_000347_520 0.2268887004 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
7 Hb_006469_110 0.2323859632 - - hypothetical protein JCGZ_12008 [Jatropha curcas]
8 Hb_004308_010 0.2350714406 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
9 Hb_003333_070 0.2357548961 - - Ent-kaurenoic acid oxidase, putative [Ricinus communis]
10 Hb_002309_030 0.2448964977 - - Glycerol dehydrogenase large subunit, putative [Theobroma cacao]
11 Hb_001369_680 0.2548328871 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
12 Hb_012799_010 0.256720061 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 isoform X2 [Jatropha curcas]
13 Hb_001688_090 0.2567320158 - - alcohol dehydrogenase 7 [Vitis vinifera]
14 Hb_001396_270 0.2632313456 - - 4-coumarate--CoA ligase family protein [Populus trichocarpa]
15 Hb_005843_020 0.2666679684 - - multidrug resistance pump, putative [Ricinus communis]
16 Hb_001514_260 0.2677567835 - - -
17 Hb_002374_540 0.270492327 - - RecName: Full=Esterase; AltName: Full=Early nodule-specific protein homolog; AltName: Full=Latex allergen Hev b 13; AltName: Allergen=Hev b 13; Flags: Precursor [Hevea brasiliensis]
18 Hb_000188_080 0.2708384429 - - PREDICTED: uncharacterized protein LOC105629484 [Jatropha curcas]
19 Hb_000042_120 0.2742643687 - - PREDICTED: uncharacterized protein LOC105632800 [Jatropha curcas]
20 Hb_006012_030 0.2771285806 - - hypothetical protein POPTR_0008s02380g [Populus trichocarpa]

Gene co-expression network

sample Hb_002641_170 Hb_002641_170 Hb_000367_110 Hb_000367_110 Hb_002641_170--Hb_000367_110 Hb_003906_020 Hb_003906_020 Hb_002641_170--Hb_003906_020 Hb_004218_100 Hb_004218_100 Hb_002641_170--Hb_004218_100 Hb_010866_020 Hb_010866_020 Hb_002641_170--Hb_010866_020 Hb_000347_520 Hb_000347_520 Hb_002641_170--Hb_000347_520 Hb_006469_110 Hb_006469_110 Hb_002641_170--Hb_006469_110 Hb_000367_110--Hb_000347_520 Hb_000188_080 Hb_000188_080 Hb_000367_110--Hb_000188_080 Hb_004308_010 Hb_004308_010 Hb_000367_110--Hb_004308_010 Hb_000367_110--Hb_004218_100 Hb_003988_020 Hb_003988_020 Hb_000367_110--Hb_003988_020 Hb_000345_060 Hb_000345_060 Hb_003906_020--Hb_000345_060 Hb_000635_020 Hb_000635_020 Hb_003906_020--Hb_000635_020 Hb_000995_020 Hb_000995_020 Hb_003906_020--Hb_000995_020 Hb_014720_100 Hb_014720_100 Hb_003906_020--Hb_014720_100 Hb_003906_020--Hb_000367_110 Hb_001396_270 Hb_001396_270 Hb_004218_100--Hb_001396_270 Hb_005914_220 Hb_005914_220 Hb_004218_100--Hb_005914_220 Hb_002309_030 Hb_002309_030 Hb_004218_100--Hb_002309_030 Hb_006012_030 Hb_006012_030 Hb_004218_100--Hb_006012_030 Hb_005870_010 Hb_005870_010 Hb_010866_020--Hb_005870_010 Hb_010866_020--Hb_000347_520 Hb_010866_020--Hb_004308_010 Hb_010866_020--Hb_006469_110 Hb_000170_170 Hb_000170_170 Hb_010866_020--Hb_000170_170 Hb_087388_010 Hb_087388_010 Hb_010866_020--Hb_087388_010 Hb_000347_520--Hb_006469_110 Hb_003333_070 Hb_003333_070 Hb_000347_520--Hb_003333_070 Hb_000347_520--Hb_000188_080 Hb_000347_520--Hb_002309_030 Hb_006469_110--Hb_002309_030 Hb_122079_010 Hb_122079_010 Hb_006469_110--Hb_122079_010 Hb_061335_010 Hb_061335_010 Hb_006469_110--Hb_061335_010 Hb_000053_150 Hb_000053_150 Hb_006469_110--Hb_000053_150 Hb_010812_080 Hb_010812_080 Hb_006469_110--Hb_010812_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0368334 0 0.0581164 0.358747 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0420809 0 0 0 0

CAGE analysis