Hb_002648_020

Information

Type transcription factor
Description TF Family: MYB
Location Contig2648: 41649-43220
Sequence    

Annotation

kegg
ID rcu:RCOM_1426110
description r2r3-myb transcription factor, putative
nr
ID XP_011013670.1
description PREDICTED: myb-related protein 330-like [Populus euphratica]
swissprot
ID Q8LPH6
description Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1
trembl
ID A0A067LA46
description MYB family protein OS=Jatropha curcas GN=JCGZ_03785 PE=4 SV=1
Gene Ontology
ID GO:0005488
description r2r3-myb transcription

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002648_020 0.0 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Populus euphratica]
2 Hb_006124_040 0.0810435173 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
3 Hb_006452_140 0.0824438201 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
4 Hb_006353_010 0.1035018978 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
5 Hb_001403_070 0.1130521427 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
6 Hb_001268_070 0.1179266982 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003683_090 0.1202277654 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
8 Hb_001486_130 0.1262211128 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
9 Hb_067034_010 0.1280980536 - - PREDICTED: vacuolar cation/proton exchanger 3-like [Jatropha curcas]
10 Hb_000890_190 0.1293297293 - - glutaredoxin, grx, putative [Ricinus communis]
11 Hb_001403_100 0.1336209636 - - hypothetical protein CICLE_v10017457mg, partial [Citrus clementina]
12 Hb_001104_260 0.1336283994 - - hypothetical protein JCGZ_23628 [Jatropha curcas]
13 Hb_004829_050 0.1337272707 - - hypothetical protein TRIUR3_09654 [Triticum urartu]
14 Hb_011639_130 0.1337933426 - - mads box protein, putative [Ricinus communis]
15 Hb_005204_030 0.1341832073 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
16 Hb_008078_040 0.134631572 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
17 Hb_000756_040 0.1348051543 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
18 Hb_000764_060 0.135401798 - - PREDICTED: uncharacterized protein LOC101491058 [Cicer arietinum]
19 Hb_007676_070 0.1356451361 - - PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Populus euphratica]
20 Hb_011924_030 0.1357026044 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_002648_020 Hb_002648_020 Hb_006124_040 Hb_006124_040 Hb_002648_020--Hb_006124_040 Hb_006452_140 Hb_006452_140 Hb_002648_020--Hb_006452_140 Hb_006353_010 Hb_006353_010 Hb_002648_020--Hb_006353_010 Hb_001403_070 Hb_001403_070 Hb_002648_020--Hb_001403_070 Hb_001268_070 Hb_001268_070 Hb_002648_020--Hb_001268_070 Hb_003683_090 Hb_003683_090 Hb_002648_020--Hb_003683_090 Hb_006124_040--Hb_006452_140 Hb_030312_060 Hb_030312_060 Hb_006124_040--Hb_030312_060 Hb_006124_040--Hb_003683_090 Hb_006124_040--Hb_001403_070 Hb_000699_200 Hb_000699_200 Hb_006124_040--Hb_000699_200 Hb_000796_100 Hb_000796_100 Hb_006452_140--Hb_000796_100 Hb_001271_040 Hb_001271_040 Hb_006452_140--Hb_001271_040 Hb_001403_100 Hb_001403_100 Hb_006452_140--Hb_001403_100 Hb_001104_260 Hb_001104_260 Hb_006452_140--Hb_001104_260 Hb_006353_010--Hb_001271_040 Hb_011924_010 Hb_011924_010 Hb_006353_010--Hb_011924_010 Hb_068447_010 Hb_068447_010 Hb_006353_010--Hb_068447_010 Hb_101778_020 Hb_101778_020 Hb_006353_010--Hb_101778_020 Hb_007676_070 Hb_007676_070 Hb_006353_010--Hb_007676_070 Hb_006586_020 Hb_006586_020 Hb_006353_010--Hb_006586_020 Hb_001749_020 Hb_001749_020 Hb_001403_070--Hb_001749_020 Hb_022630_010 Hb_022630_010 Hb_001403_070--Hb_022630_010 Hb_011924_030 Hb_011924_030 Hb_001403_070--Hb_011924_030 Hb_001486_130 Hb_001486_130 Hb_001403_070--Hb_001486_130 Hb_001403_070--Hb_006452_140 Hb_012553_010 Hb_012553_010 Hb_001268_070--Hb_012553_010 Hb_124207_010 Hb_124207_010 Hb_001268_070--Hb_124207_010 Hb_166257_010 Hb_166257_010 Hb_001268_070--Hb_166257_010 Hb_000070_140 Hb_000070_140 Hb_001268_070--Hb_000070_140 Hb_009297_010 Hb_009297_010 Hb_001268_070--Hb_009297_010 Hb_000890_190 Hb_000890_190 Hb_003683_090--Hb_000890_190 Hb_003683_090--Hb_000699_200 Hb_000473_010 Hb_000473_010 Hb_003683_090--Hb_000473_010 Hb_002193_050 Hb_002193_050 Hb_003683_090--Hb_002193_050 Hb_000510_350 Hb_000510_350 Hb_003683_090--Hb_000510_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 10.1637 0.344974 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.43772 0.0788552

CAGE analysis