Hb_002652_010

Information

Type -
Description -
Location Contig2652: 2836-4026
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002652_010 0.0 - - -
2 Hb_056550_010 0.314349388 - - PREDICTED: uncharacterized protein LOC104112577 [Nicotiana tomentosiformis]
3 Hb_000351_150 0.3159185642 - - Wall-associated kinase 2, putative [Theobroma cacao]
4 Hb_087426_010 0.3251264299 - - PREDICTED: uncharacterized protein LOC105803348 [Gossypium raimondii]
5 Hb_037790_010 0.3356946355 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
6 Hb_155720_010 0.3683134474 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
7 Hb_075722_010 0.3683995317 - - hypothetical protein JCGZ_01984 [Jatropha curcas]
8 Hb_000098_090 0.3704205936 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
9 Hb_048610_010 0.3784669833 - - -
10 Hb_019617_010 0.3791909361 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_029162_020 0.3810314934 - - -
12 Hb_003725_050 0.3845334585 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
13 Hb_006869_010 0.3910736977 - - unnamed protein product [Coffea canephora]
14 Hb_000018_050 0.3942668467 - - PREDICTED: uncharacterized protein LOC104899363 [Beta vulgaris subsp. vulgaris]
15 Hb_000101_280 0.394722389 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
16 Hb_000709_020 0.4007938925 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_006212_030 0.4025919992 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
18 Hb_032496_020 0.4028894852 - - -
19 Hb_001005_090 0.4057031341 - - PREDICTED: uncharacterized protein LOC105630219 [Jatropha curcas]
20 Hb_004696_050 0.4098786544 - - -

Gene co-expression network

sample Hb_002652_010 Hb_002652_010 Hb_056550_010 Hb_056550_010 Hb_002652_010--Hb_056550_010 Hb_000351_150 Hb_000351_150 Hb_002652_010--Hb_000351_150 Hb_087426_010 Hb_087426_010 Hb_002652_010--Hb_087426_010 Hb_037790_010 Hb_037790_010 Hb_002652_010--Hb_037790_010 Hb_155720_010 Hb_155720_010 Hb_002652_010--Hb_155720_010 Hb_075722_010 Hb_075722_010 Hb_002652_010--Hb_075722_010 Hb_056550_010--Hb_000351_150 Hb_056550_010--Hb_087426_010 Hb_004018_010 Hb_004018_010 Hb_056550_010--Hb_004018_010 Hb_000709_020 Hb_000709_020 Hb_056550_010--Hb_000709_020 Hb_056550_010--Hb_075722_010 Hb_163663_010 Hb_163663_010 Hb_056550_010--Hb_163663_010 Hb_000351_150--Hb_087426_010 Hb_000351_150--Hb_004018_010 Hb_000351_150--Hb_000709_020 Hb_000351_150--Hb_075722_010 Hb_000351_150--Hb_163663_010 Hb_087426_010--Hb_000709_020 Hb_087426_010--Hb_163663_010 Hb_087426_010--Hb_004018_010 Hb_000101_280 Hb_000101_280 Hb_087426_010--Hb_000101_280 Hb_000018_050 Hb_000018_050 Hb_037790_010--Hb_000018_050 Hb_002860_020 Hb_002860_020 Hb_037790_010--Hb_002860_020 Hb_037790_010--Hb_000101_280 Hb_037790_010--Hb_163663_010 Hb_037790_010--Hb_087426_010 Hb_037790_010--Hb_000709_020 Hb_019617_010 Hb_019617_010 Hb_155720_010--Hb_019617_010 Hb_114988_010 Hb_114988_010 Hb_155720_010--Hb_114988_010 Hb_003605_010 Hb_003605_010 Hb_155720_010--Hb_003605_010 Hb_173121_010 Hb_173121_010 Hb_155720_010--Hb_173121_010 Hb_067730_010 Hb_067730_010 Hb_155720_010--Hb_067730_010 Hb_003725_050 Hb_003725_050 Hb_155720_010--Hb_003725_050 Hb_038508_010 Hb_038508_010 Hb_075722_010--Hb_038508_010 Hb_000155_240 Hb_000155_240 Hb_075722_010--Hb_000155_240 Hb_075722_010--Hb_087426_010 Hb_000789_140 Hb_000789_140 Hb_075722_010--Hb_000789_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.247223 0 0 0 0 0.118686
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0461891 0.03633 0 0 0.149407

CAGE analysis