Hb_002652_040

Information

Type -
Description -
Location Contig2652: 53398-66211
Sequence    

Annotation

kegg
ID rcu:RCOM_0157900
description hypothetical protein
nr
ID XP_012075290.1
description PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KSQ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09459 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27730: 53583-55215
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002652_040 0.0 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
2 Hb_000035_040 0.0422756155 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
3 Hb_000331_190 0.0427076851 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
4 Hb_000424_010 0.0509068277 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
5 Hb_125092_020 0.059113763 - - PREDICTED: nucleolin 1-like isoform X1 [Jatropha curcas]
6 Hb_002883_010 0.0624934934 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
7 Hb_175338_020 0.0632726649 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
8 Hb_008143_030 0.0688963639 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]
9 Hb_031754_010 0.0690593519 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
10 Hb_000343_210 0.0694129787 - - ran-binding protein, putative [Ricinus communis]
11 Hb_000329_130 0.0717095309 - - beta-tubulin cofactor d, putative [Ricinus communis]
12 Hb_000567_010 0.0726496028 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
13 Hb_002675_060 0.0738531871 - - PREDICTED: uncharacterized protein LOC105634954 isoform X2 [Jatropha curcas]
14 Hb_000531_090 0.0753544171 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
15 Hb_000139_250 0.0755321663 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
16 Hb_020665_030 0.0768532909 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000417_160 0.0769927226 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
18 Hb_000239_070 0.0770376986 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
19 Hb_001221_040 0.0775697135 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
20 Hb_002235_320 0.0777485777 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002652_040 Hb_002652_040 Hb_000035_040 Hb_000035_040 Hb_002652_040--Hb_000035_040 Hb_000331_190 Hb_000331_190 Hb_002652_040--Hb_000331_190 Hb_000424_010 Hb_000424_010 Hb_002652_040--Hb_000424_010 Hb_125092_020 Hb_125092_020 Hb_002652_040--Hb_125092_020 Hb_002883_010 Hb_002883_010 Hb_002652_040--Hb_002883_010 Hb_175338_020 Hb_175338_020 Hb_002652_040--Hb_175338_020 Hb_000035_040--Hb_000424_010 Hb_031754_010 Hb_031754_010 Hb_000035_040--Hb_031754_010 Hb_000035_040--Hb_000331_190 Hb_000531_090 Hb_000531_090 Hb_000035_040--Hb_000531_090 Hb_002043_170 Hb_002043_170 Hb_000035_040--Hb_002043_170 Hb_000331_190--Hb_125092_020 Hb_024990_010 Hb_024990_010 Hb_000331_190--Hb_024990_010 Hb_000567_010 Hb_000567_010 Hb_000331_190--Hb_000567_010 Hb_000340_160 Hb_000340_160 Hb_000331_190--Hb_000340_160 Hb_002221_050 Hb_002221_050 Hb_000424_010--Hb_002221_050 Hb_000529_260 Hb_000529_260 Hb_000424_010--Hb_000529_260 Hb_000139_250 Hb_000139_250 Hb_000424_010--Hb_000139_250 Hb_000424_010--Hb_175338_020 Hb_125092_020--Hb_000531_090 Hb_125092_020--Hb_000035_040 Hb_125092_020--Hb_024990_010 Hb_125092_020--Hb_000567_010 Hb_001437_100 Hb_001437_100 Hb_002883_010--Hb_001437_100 Hb_002883_010--Hb_002043_170 Hb_000317_440 Hb_000317_440 Hb_002883_010--Hb_000317_440 Hb_002883_010--Hb_031754_010 Hb_000239_070 Hb_000239_070 Hb_002883_010--Hb_000239_070 Hb_004162_280 Hb_004162_280 Hb_175338_020--Hb_004162_280 Hb_000227_380 Hb_000227_380 Hb_175338_020--Hb_000227_380 Hb_175338_020--Hb_000529_260 Hb_007849_020 Hb_007849_020 Hb_175338_020--Hb_007849_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.0132 15.2535 10.4626 7.76534 37.4148 34.4212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.0535 9.89954 11.3399 15.7387 8.3866

CAGE analysis