Hb_002656_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2656: 30331-33579
Sequence    

Annotation

kegg
ID rcu:RCOM_0454760
description hypothetical protein
nr
ID XP_002529484.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8W4J9
description Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2
trembl
ID B9SU15
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0454760 PE=4 SV=1
Gene Ontology
ID GO:0005515
description disease resistance rpp13-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002656_010 0.0 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
2 Hb_005896_010 0.2098588916 - - -
3 Hb_149515_010 0.2308881344 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
4 Hb_000215_340 0.246155211 - - gamma glutamyl transpeptidases, putative [Ricinus communis]
5 Hb_000840_040 0.251610086 - - monoxygenase, putative [Ricinus communis]
6 Hb_001373_010 0.252998913 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
7 Hb_159198_010 0.2549463234 - - hypothetical protein VITISV_033829 [Vitis vinifera]
8 Hb_008749_090 0.2581211816 - - hypothetical protein CICLE_v10017161mg [Citrus clementina]
9 Hb_006683_030 0.2582795474 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
10 Hb_000367_310 0.2586676425 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
11 Hb_007919_040 0.2597005791 - - PREDICTED: protein LYK5 [Jatropha curcas]
12 Hb_007416_150 0.2692525785 - - sarcosine oxidase, putative [Ricinus communis]
13 Hb_012788_010 0.2722845644 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
14 Hb_008145_010 0.2739267798 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
15 Hb_000928_040 0.2741668504 - - cytochrome P450, putative [Ricinus communis]
16 Hb_000067_010 0.274203075 - - hypothetical protein B456_002G147500 [Gossypium raimondii]
17 Hb_000521_300 0.2752460396 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
18 Hb_117168_010 0.2756088715 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
19 Hb_005736_070 0.2757717134 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
20 Hb_000649_180 0.2782374655 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_002656_010 Hb_002656_010 Hb_005896_010 Hb_005896_010 Hb_002656_010--Hb_005896_010 Hb_149515_010 Hb_149515_010 Hb_002656_010--Hb_149515_010 Hb_000215_340 Hb_000215_340 Hb_002656_010--Hb_000215_340 Hb_000840_040 Hb_000840_040 Hb_002656_010--Hb_000840_040 Hb_001373_010 Hb_001373_010 Hb_002656_010--Hb_001373_010 Hb_159198_010 Hb_159198_010 Hb_002656_010--Hb_159198_010 Hb_006683_030 Hb_006683_030 Hb_005896_010--Hb_006683_030 Hb_005896_010--Hb_159198_010 Hb_005896_010--Hb_000840_040 Hb_008749_090 Hb_008749_090 Hb_005896_010--Hb_008749_090 Hb_003517_010 Hb_003517_010 Hb_005896_010--Hb_003517_010 Hb_008145_010 Hb_008145_010 Hb_149515_010--Hb_008145_010 Hb_011909_010 Hb_011909_010 Hb_149515_010--Hb_011909_010 Hb_000649_180 Hb_000649_180 Hb_149515_010--Hb_000649_180 Hb_002291_020 Hb_002291_020 Hb_149515_010--Hb_002291_020 Hb_007919_040 Hb_007919_040 Hb_149515_010--Hb_007919_040 Hb_000141_010 Hb_000141_010 Hb_149515_010--Hb_000141_010 Hb_011214_140 Hb_011214_140 Hb_000215_340--Hb_011214_140 Hb_000685_060 Hb_000685_060 Hb_000215_340--Hb_000685_060 Hb_051100_010 Hb_051100_010 Hb_000215_340--Hb_051100_010 Hb_003299_010 Hb_003299_010 Hb_000215_340--Hb_003299_010 Hb_001009_110 Hb_001009_110 Hb_000215_340--Hb_001009_110 Hb_005736_070 Hb_005736_070 Hb_000215_340--Hb_005736_070 Hb_003185_100 Hb_003185_100 Hb_000840_040--Hb_003185_100 Hb_000840_040--Hb_149515_010 Hb_000840_040--Hb_000141_010 Hb_000840_040--Hb_159198_010 Hb_002043_010 Hb_002043_010 Hb_000840_040--Hb_002043_010 Hb_001485_010 Hb_001485_010 Hb_000840_040--Hb_001485_010 Hb_117168_010 Hb_117168_010 Hb_001373_010--Hb_117168_010 Hb_000521_300 Hb_000521_300 Hb_001373_010--Hb_000521_300 Hb_002218_070 Hb_002218_070 Hb_001373_010--Hb_002218_070 Hb_004218_160 Hb_004218_160 Hb_001373_010--Hb_004218_160 Hb_001373_010--Hb_007919_040 Hb_057079_020 Hb_057079_020 Hb_001373_010--Hb_057079_020 Hb_159198_010--Hb_149515_010 Hb_159198_010--Hb_003517_010 Hb_000067_030 Hb_000067_030 Hb_159198_010--Hb_000067_030 Hb_159198_010--Hb_000141_010 Hb_002740_170 Hb_002740_170 Hb_159198_010--Hb_002740_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.317112 2.00813 0.119317 0.257383 0 0.089035
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0133322 0 0.884196 2.22529 0.582823

CAGE analysis