Hb_002656_040

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2656: 112434-115572
Sequence    

Annotation

kegg
ID rcu:RCOM_0454760
description hypothetical protein
nr
ID XP_002529484.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P0C8S1
description Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=3 SV=1
trembl
ID B9SU15
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0454760 PE=4 SV=1
Gene Ontology
ID GO:0043531
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002656_040 0.0 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
2 Hb_000001_030 0.0002271589 - - polyprotein [Citrus endogenous pararetrovirus]
3 Hb_084299_010 0.0002429623 - - PREDICTED: uncharacterized protein LOC104233139 [Nicotiana sylvestris]
4 Hb_008269_020 0.0008371779 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_000118_050 0.0009046666 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_065059_010 0.0011626636 - - PREDICTED: uncharacterized protein LOC104907634 [Beta vulgaris subsp. vulgaris]
7 Hb_099586_010 0.0027472157 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
8 Hb_009813_040 0.0040144897 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
9 Hb_072825_010 0.0079664458 - - Uncharacterized protein TCM_023328 [Theobroma cacao]
10 Hb_002982_060 0.0104000316 - - hypothetical protein JCGZ_19604 [Jatropha curcas]
11 Hb_000283_160 0.011430267 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
12 Hb_068578_010 0.0144488361 - - PREDICTED: uncharacterized protein LOC105789577 [Gossypium raimondii]
13 Hb_031104_010 0.014634407 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
14 Hb_001629_070 0.0147080844 transcription factor TF Family: ULT Protein ULTRAPETALA2, putative [Ricinus communis]
15 Hb_048482_010 0.0171819887 - - -
16 Hb_104984_010 0.0218831052 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
17 Hb_000206_260 0.0227713726 - - cysteine protease, putative [Ricinus communis]
18 Hb_189099_010 0.0236741066 - - PREDICTED: uncharacterized protein At1g04910-like [Citrus sinensis]
19 Hb_041626_010 0.0255849746 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
20 Hb_073373_010 0.026160938 - - hypothetical protein JCGZ_11284 [Jatropha curcas]

Gene co-expression network

sample Hb_002656_040 Hb_002656_040 Hb_000001_030 Hb_000001_030 Hb_002656_040--Hb_000001_030 Hb_084299_010 Hb_084299_010 Hb_002656_040--Hb_084299_010 Hb_008269_020 Hb_008269_020 Hb_002656_040--Hb_008269_020 Hb_000118_050 Hb_000118_050 Hb_002656_040--Hb_000118_050 Hb_065059_010 Hb_065059_010 Hb_002656_040--Hb_065059_010 Hb_099586_010 Hb_099586_010 Hb_002656_040--Hb_099586_010 Hb_000001_030--Hb_084299_010 Hb_000001_030--Hb_008269_020 Hb_000001_030--Hb_000118_050 Hb_000001_030--Hb_065059_010 Hb_000001_030--Hb_099586_010 Hb_084299_010--Hb_008269_020 Hb_084299_010--Hb_000118_050 Hb_084299_010--Hb_065059_010 Hb_084299_010--Hb_099586_010 Hb_008269_020--Hb_000118_050 Hb_008269_020--Hb_065059_010 Hb_008269_020--Hb_099586_010 Hb_000118_050--Hb_065059_010 Hb_000118_050--Hb_099586_010 Hb_065059_010--Hb_099586_010 Hb_009813_040 Hb_009813_040 Hb_099586_010--Hb_009813_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00614091 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0236596

CAGE analysis