Hb_002659_040

Information

Type -
Description -
Location Contig2659: 65204-68268
Sequence    

Annotation

kegg
ID rcu:RCOM_1602030
description hydroxysteroid dehydrogenase, putative (EC:1.1.1.170)
nr
ID XP_002510725.1
description hydroxysteroid dehydrogenase, putative [Ricinus communis]
swissprot
ID Q4R7R1
description Short-chain dehydrogenase/reductase family 42E member 1 OS=Macaca fascicularis GN=SDR42E1 PE=2 SV=1
trembl
ID B9R8T2
description Hydroxysteroid dehydrogenase, putative OS=Ricinus communis GN=RCOM_1602030 PE=3 SV=1
Gene Ontology
ID GO:0003854
description short-chain dehydrogenase reductase family 42e member 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27751: 63615-64437 , PASA_asmbl_27752: 65315-68396 , PASA_asmbl_27753: 66622-68303 , PASA_asmbl_27754: 66722-66963 , PASA_asmbl_27755: 65573-66423
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002659_040 0.0 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
2 Hb_000424_210 0.0941821708 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
3 Hb_000162_140 0.106584424 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2 [Jatropha curcas]
4 Hb_001762_060 0.1149419115 - - pantothenate kinase, putative [Ricinus communis]
5 Hb_162275_030 0.1209286748 - - PREDICTED: uncharacterized protein LOC105646638 [Jatropha curcas]
6 Hb_001427_230 0.1232722647 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000398_160 0.1341752841 - - GDP-mannose transporter, putative [Ricinus communis]
8 Hb_004650_100 0.1351420668 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
9 Hb_093458_050 0.1381958871 - - glutathione reductase [Hevea brasiliensis]
10 Hb_005527_040 0.1382697929 - - PREDICTED: methionine adenosyltransferase 2 subunit beta [Jatropha curcas]
11 Hb_002014_160 0.1427648961 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor C-1 [Jatropha curcas]
12 Hb_000329_330 0.1434634086 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
13 Hb_000922_100 0.1457690364 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
14 Hb_002735_060 0.1463342389 - - PREDICTED: desumoylating isopeptidase 1 [Jatropha curcas]
15 Hb_000032_040 0.1467318245 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
16 Hb_001006_180 0.1478860051 - - PREDICTED: endonuclease V-like [Jatropha curcas]
17 Hb_001135_210 0.1484268548 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
18 Hb_001545_060 0.1491542156 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
19 Hb_007382_150 0.149770056 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
20 Hb_000563_560 0.1497817324 - - PREDICTED: bidirectional sugar transporter SWEET17 [Jatropha curcas]

Gene co-expression network

sample Hb_002659_040 Hb_002659_040 Hb_000424_210 Hb_000424_210 Hb_002659_040--Hb_000424_210 Hb_000162_140 Hb_000162_140 Hb_002659_040--Hb_000162_140 Hb_001762_060 Hb_001762_060 Hb_002659_040--Hb_001762_060 Hb_162275_030 Hb_162275_030 Hb_002659_040--Hb_162275_030 Hb_001427_230 Hb_001427_230 Hb_002659_040--Hb_001427_230 Hb_000398_160 Hb_000398_160 Hb_002659_040--Hb_000398_160 Hb_000196_080 Hb_000196_080 Hb_000424_210--Hb_000196_080 Hb_001519_030 Hb_001519_030 Hb_000424_210--Hb_001519_030 Hb_093458_050 Hb_093458_050 Hb_000424_210--Hb_093458_050 Hb_000424_210--Hb_000162_140 Hb_000099_130 Hb_000099_130 Hb_000424_210--Hb_000099_130 Hb_005839_110 Hb_005839_110 Hb_000162_140--Hb_005839_110 Hb_003147_050 Hb_003147_050 Hb_000162_140--Hb_003147_050 Hb_001616_060 Hb_001616_060 Hb_000162_140--Hb_001616_060 Hb_003929_120 Hb_003929_120 Hb_000162_140--Hb_003929_120 Hb_002078_460 Hb_002078_460 Hb_000162_140--Hb_002078_460 Hb_001006_180 Hb_001006_180 Hb_001762_060--Hb_001006_180 Hb_000032_040 Hb_000032_040 Hb_001762_060--Hb_000032_040 Hb_000069_100 Hb_000069_100 Hb_001762_060--Hb_000069_100 Hb_024714_060 Hb_024714_060 Hb_001762_060--Hb_024714_060 Hb_012423_050 Hb_012423_050 Hb_001762_060--Hb_012423_050 Hb_001762_060--Hb_000398_160 Hb_162275_030--Hb_001006_180 Hb_162275_030--Hb_001762_060 Hb_002735_060 Hb_002735_060 Hb_162275_030--Hb_002735_060 Hb_002119_120 Hb_002119_120 Hb_162275_030--Hb_002119_120 Hb_007382_150 Hb_007382_150 Hb_162275_030--Hb_007382_150 Hb_000069_550 Hb_000069_550 Hb_162275_030--Hb_000069_550 Hb_001307_090 Hb_001307_090 Hb_001427_230--Hb_001307_090 Hb_000722_040 Hb_000722_040 Hb_001427_230--Hb_000722_040 Hb_001427_230--Hb_000398_160 Hb_000648_020 Hb_000648_020 Hb_001427_230--Hb_000648_020 Hb_000224_120 Hb_000224_120 Hb_001427_230--Hb_000224_120 Hb_124755_010 Hb_124755_010 Hb_001427_230--Hb_124755_010 Hb_006831_030 Hb_006831_030 Hb_000398_160--Hb_006831_030 Hb_004041_040 Hb_004041_040 Hb_000398_160--Hb_004041_040 Hb_000272_070 Hb_000272_070 Hb_000398_160--Hb_000272_070 Hb_000398_160--Hb_000069_100 Hb_000398_160--Hb_001006_180 Hb_000398_160--Hb_003929_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0712 3.53712 5.0265 11.2359 14.7851 12.2804
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.0246 36.7642 59.5517 17.4616 6.09086

CAGE analysis