Hb_002659_070

Information

Type -
Description -
Location Contig2659: 105085-109438
Sequence    

Annotation

kegg
ID pop:POPTR_0002s00610g
description POPTRDRAFT_550726; RNA recognition motif-containing family protein
nr
ID XP_012073568.1
description PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
swissprot
ID Q9M1S3
description Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1
trembl
ID A0A067KKX2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08033 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna recognition motif-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27758: 105126-106120 , PASA_asmbl_27759: 106171-106686
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002659_070 0.0 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
2 Hb_012008_020 0.0745823306 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
3 Hb_141131_010 0.0751556115 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
4 Hb_000245_130 0.0771547988 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
5 Hb_004128_190 0.0826625528 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
6 Hb_002078_150 0.0880228544 - - protein with unknown function [Ricinus communis]
7 Hb_009767_120 0.0883905875 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
8 Hb_004195_160 0.0890477842 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
9 Hb_000019_230 0.0895646808 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
10 Hb_002660_080 0.0896024765 - - 60S ribosomal protein L12A [Hevea brasiliensis]
11 Hb_000398_180 0.0916547367 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
12 Hb_001358_030 0.0916663564 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
13 Hb_143813_010 0.0923169521 - - PREDICTED: 60S ribosomal protein L13-1 [Nelumbo nucifera]
14 Hb_003038_030 0.0926667637 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
15 Hb_004545_060 0.0932142743 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
16 Hb_005333_070 0.0947476398 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003097_150 0.0950479762 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
18 Hb_000103_560 0.0960271877 - - ADP-ribosylation factor, putative [Ricinus communis]
19 Hb_010436_070 0.0961653385 - - PREDICTED: endoribonuclease Dicer homolog 4-like [Nicotiana tomentosiformis]
20 Hb_003120_060 0.0966163783 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002659_070 Hb_002659_070 Hb_012008_020 Hb_012008_020 Hb_002659_070--Hb_012008_020 Hb_141131_010 Hb_141131_010 Hb_002659_070--Hb_141131_010 Hb_000245_130 Hb_000245_130 Hb_002659_070--Hb_000245_130 Hb_004128_190 Hb_004128_190 Hb_002659_070--Hb_004128_190 Hb_002078_150 Hb_002078_150 Hb_002659_070--Hb_002078_150 Hb_009767_120 Hb_009767_120 Hb_002659_070--Hb_009767_120 Hb_003010_030 Hb_003010_030 Hb_012008_020--Hb_003010_030 Hb_001358_030 Hb_001358_030 Hb_012008_020--Hb_001358_030 Hb_009557_070 Hb_009557_070 Hb_012008_020--Hb_009557_070 Hb_000959_260 Hb_000959_260 Hb_012008_020--Hb_000959_260 Hb_002660_080 Hb_002660_080 Hb_012008_020--Hb_002660_080 Hb_002391_300 Hb_002391_300 Hb_012008_020--Hb_002391_300 Hb_004944_010 Hb_004944_010 Hb_141131_010--Hb_004944_010 Hb_001124_210 Hb_001124_210 Hb_141131_010--Hb_001124_210 Hb_003038_030 Hb_003038_030 Hb_141131_010--Hb_003038_030 Hb_000620_080 Hb_000620_080 Hb_141131_010--Hb_000620_080 Hb_004545_060 Hb_004545_060 Hb_141131_010--Hb_004545_060 Hb_002217_310 Hb_002217_310 Hb_141131_010--Hb_002217_310 Hb_000032_290 Hb_000032_290 Hb_000245_130--Hb_000032_290 Hb_000245_130--Hb_004128_190 Hb_003847_080 Hb_003847_080 Hb_000245_130--Hb_003847_080 Hb_005333_070 Hb_005333_070 Hb_000245_130--Hb_005333_070 Hb_002374_160 Hb_002374_160 Hb_000245_130--Hb_002374_160 Hb_000245_130--Hb_002078_150 Hb_004128_190--Hb_002078_150 Hb_004128_190--Hb_003847_080 Hb_000103_090 Hb_000103_090 Hb_004128_190--Hb_000103_090 Hb_012305_050 Hb_012305_050 Hb_004128_190--Hb_012305_050 Hb_000024_080 Hb_000024_080 Hb_004128_190--Hb_000024_080 Hb_000103_560 Hb_000103_560 Hb_002078_150--Hb_000103_560 Hb_000398_180 Hb_000398_180 Hb_002078_150--Hb_000398_180 Hb_002078_150--Hb_003847_080 Hb_001377_290 Hb_001377_290 Hb_002078_150--Hb_001377_290 Hb_002078_150--Hb_004545_060 Hb_000933_180 Hb_000933_180 Hb_009767_120--Hb_000933_180 Hb_003874_020 Hb_003874_020 Hb_009767_120--Hb_003874_020 Hb_000690_080 Hb_000690_080 Hb_009767_120--Hb_000690_080 Hb_011360_140 Hb_011360_140 Hb_009767_120--Hb_011360_140 Hb_011828_050 Hb_011828_050 Hb_009767_120--Hb_011828_050 Hb_001369_650 Hb_001369_650 Hb_009767_120--Hb_001369_650
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.2553 8.15203 3.44325 11.3941 19.7166 25.8069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.5833 27.1047 12.757 7.54092 5.5634

CAGE analysis