Hb_002659_140

Information

Type -
Description -
Location Contig2659: 131575-135218
Sequence    

Annotation

kegg
ID rcu:RCOM_1602080
description cinnamoyl-CoA reductase, putative (EC:1.1.1.219)
nr
ID KDP36740.1
description hypothetical protein JCGZ_08031 [Jatropha curcas]
swissprot
ID Q9SAH9
description Cinnamoyl-CoA reductase 2 OS=Arabidopsis thaliana GN=CCR2 PE=1 SV=1
trembl
ID A0A067KWX5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08031 PE=4 SV=1
Gene Ontology
ID GO:0003824
description cinnamoyl- reductase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27761: 131605-135279 , PASA_asmbl_27763: 134382-134585
cDNA
(Sanger)
(ID:Location)		 023_L18.ab1: 134014-135279 , 048_H06.ab1: 133718-135260

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002659_140 0.0 - - hypothetical protein JCGZ_08031 [Jatropha curcas]
2 Hb_011224_080 0.0827013439 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
3 Hb_004970_200 0.1014111029 - - serine/threonine-protein kinase, putative [Ricinus communis]
4 Hb_010174_130 0.109334651 - - PREDICTED: regulator of G-protein signaling 1 [Jatropha curcas]
5 Hb_001001_160 0.1096576162 - - Phosphatidic acid phosphohydrolase 2 isoform 1 [Theobroma cacao]
6 Hb_000025_200 0.1112243812 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
7 Hb_002111_050 0.1114307607 - - PREDICTED: uncharacterized protein LOC105641242 [Jatropha curcas]
8 Hb_002368_050 0.1114597634 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000057_060 0.1142097021 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
10 Hb_006569_020 0.1145089432 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
11 Hb_168918_020 0.1155851794 - - pectin acetylesterase, putative [Ricinus communis]
12 Hb_005941_010 0.1160510257 - - PREDICTED: protein SAND [Jatropha curcas]
13 Hb_002942_020 0.1160738152 - - nucleotide binding protein, putative [Ricinus communis]
14 Hb_000538_210 0.1166054269 - - ATP binding protein, putative [Ricinus communis]
15 Hb_002973_080 0.1167096061 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
16 Hb_005333_040 0.1169672763 - - PREDICTED: dnaJ homolog subfamily C member 5 [Prunus mume]
17 Hb_000771_140 0.1180499919 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
18 Hb_007760_030 0.1182952641 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
19 Hb_003057_120 0.1191772472 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
20 Hb_003125_040 0.1196285111 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002659_140 Hb_002659_140 Hb_011224_080 Hb_011224_080 Hb_002659_140--Hb_011224_080 Hb_004970_200 Hb_004970_200 Hb_002659_140--Hb_004970_200 Hb_010174_130 Hb_010174_130 Hb_002659_140--Hb_010174_130 Hb_001001_160 Hb_001001_160 Hb_002659_140--Hb_001001_160 Hb_000025_200 Hb_000025_200 Hb_002659_140--Hb_000025_200 Hb_002111_050 Hb_002111_050 Hb_002659_140--Hb_002111_050 Hb_006693_030 Hb_006693_030 Hb_011224_080--Hb_006693_030 Hb_000029_030 Hb_000029_030 Hb_011224_080--Hb_000029_030 Hb_002368_050 Hb_002368_050 Hb_011224_080--Hb_002368_050 Hb_168918_020 Hb_168918_020 Hb_011224_080--Hb_168918_020 Hb_000556_080 Hb_000556_080 Hb_011224_080--Hb_000556_080 Hb_002973_080 Hb_002973_080 Hb_004970_200--Hb_002973_080 Hb_000107_390 Hb_000107_390 Hb_004970_200--Hb_000107_390 Hb_005333_040 Hb_005333_040 Hb_004970_200--Hb_005333_040 Hb_000538_020 Hb_000538_020 Hb_004970_200--Hb_000538_020 Hb_004970_200--Hb_001001_160 Hb_010174_130--Hb_001001_160 Hb_002506_010 Hb_002506_010 Hb_010174_130--Hb_002506_010 Hb_000696_110 Hb_000696_110 Hb_010174_130--Hb_000696_110 Hb_003404_030 Hb_003404_030 Hb_010174_130--Hb_003404_030 Hb_010174_130--Hb_000029_030 Hb_010174_130--Hb_000025_200 Hb_001001_160--Hb_000025_200 Hb_000733_060 Hb_000733_060 Hb_001001_160--Hb_000733_060 Hb_000771_110 Hb_000771_110 Hb_001001_160--Hb_000771_110 Hb_000001_020 Hb_000001_020 Hb_001001_160--Hb_000001_020 Hb_002377_040 Hb_002377_040 Hb_001001_160--Hb_002377_040 Hb_000025_200--Hb_000001_020 Hb_007908_020 Hb_007908_020 Hb_000025_200--Hb_007908_020 Hb_000025_200--Hb_002368_050 Hb_002027_130 Hb_002027_130 Hb_000025_200--Hb_002027_130 Hb_000025_200--Hb_002973_080 Hb_006816_290 Hb_006816_290 Hb_002111_050--Hb_006816_290 Hb_001437_300 Hb_001437_300 Hb_002111_050--Hb_001437_300 Hb_002111_050--Hb_011224_080 Hb_000352_110 Hb_000352_110 Hb_002111_050--Hb_000352_110 Hb_002226_030 Hb_002226_030 Hb_002111_050--Hb_002226_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
116.573 9.19016 24.6371 12.4214 161.176 123.974
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
154.703 90.7048 112.108 23.0895 26.9059

CAGE analysis