Hb_002660_010

Information

Type transcription factor
Description TF Family: ARF
Location Contig2660: 10698-17044
Sequence    

Annotation

kegg
ID rcu:RCOM_1355780
description Auxin response factor, putative
nr
ID XP_012082361.1
description PREDICTED: auxin response factor 18-like [Jatropha curcas]
swissprot
ID Q653H7
description Auxin response factor 18 OS=Oryza sativa subsp. japonica GN=ARF18 PE=2 SV=1
trembl
ID A0A067JYZ2
description Auxin response factor OS=Jatropha curcas GN=JCGZ_16506 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor 18-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27765: 11182-13382 , PASA_asmbl_27766: 14159-14488 , PASA_asmbl_27767: 14847-16202 , PASA_asmbl_27769: 16595-17189
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002660_010 0.0 transcription factor TF Family: ARF PREDICTED: auxin response factor 18-like [Jatropha curcas]
2 Hb_002006_030 0.0802310363 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER [Jatropha curcas]
3 Hb_000227_120 0.0810428928 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005348_140 0.0844069253 - - PREDICTED: ubiquinone biosynthesis protein COQ9-B, mitochondrial [Jatropha curcas]
5 Hb_001318_270 0.0900352738 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
6 Hb_002391_310 0.0901621773 - - hypothetical protein PRUPE_ppa021315mg [Prunus persica]
7 Hb_009486_140 0.0903791171 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
8 Hb_001226_040 0.0911499199 - - protein with unknown function [Ricinus communis]
9 Hb_003142_020 0.091889098 - - PREDICTED: uncharacterized protein LOC105648334 [Jatropha curcas]
10 Hb_001726_020 0.0925985736 - - PREDICTED: endophilin-A1 [Jatropha curcas]
11 Hb_002110_150 0.0929161059 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
12 Hb_002499_040 0.0950530894 - - PREDICTED: probable serine/threonine-protein kinase GCN2 isoform X2 [Jatropha curcas]
13 Hb_070256_010 0.0953893697 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105630457 [Jatropha curcas]
14 Hb_009767_110 0.0954660818 - - -
15 Hb_000041_100 0.0955562202 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
16 Hb_002725_120 0.0957209294 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]
17 Hb_001198_100 0.0961178328 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
18 Hb_000529_170 0.0972861758 - - hypothetical protein JCGZ_14691 [Jatropha curcas]
19 Hb_002046_180 0.097999546 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
20 Hb_000556_160 0.0986704526 - - PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002660_010 Hb_002660_010 Hb_002006_030 Hb_002006_030 Hb_002660_010--Hb_002006_030 Hb_000227_120 Hb_000227_120 Hb_002660_010--Hb_000227_120 Hb_005348_140 Hb_005348_140 Hb_002660_010--Hb_005348_140 Hb_001318_270 Hb_001318_270 Hb_002660_010--Hb_001318_270 Hb_002391_310 Hb_002391_310 Hb_002660_010--Hb_002391_310 Hb_009486_140 Hb_009486_140 Hb_002660_010--Hb_009486_140 Hb_002006_030--Hb_009486_140 Hb_002218_090 Hb_002218_090 Hb_002006_030--Hb_002218_090 Hb_000684_470 Hb_000684_470 Hb_002006_030--Hb_000684_470 Hb_001862_210 Hb_001862_210 Hb_002006_030--Hb_001862_210 Hb_070256_010 Hb_070256_010 Hb_002006_030--Hb_070256_010 Hb_003142_020 Hb_003142_020 Hb_000227_120--Hb_003142_020 Hb_003106_060 Hb_003106_060 Hb_000227_120--Hb_003106_060 Hb_000227_120--Hb_000684_470 Hb_003291_010 Hb_003291_010 Hb_000227_120--Hb_003291_010 Hb_009382_010 Hb_009382_010 Hb_000227_120--Hb_009382_010 Hb_001617_050 Hb_001617_050 Hb_005348_140--Hb_001617_050 Hb_002105_040 Hb_002105_040 Hb_005348_140--Hb_002105_040 Hb_001226_040 Hb_001226_040 Hb_005348_140--Hb_001226_040 Hb_000175_460 Hb_000175_460 Hb_005348_140--Hb_000175_460 Hb_003862_050 Hb_003862_050 Hb_005348_140--Hb_003862_050 Hb_000512_060 Hb_000512_060 Hb_005348_140--Hb_000512_060 Hb_012325_020 Hb_012325_020 Hb_001318_270--Hb_012325_020 Hb_002110_150 Hb_002110_150 Hb_001318_270--Hb_002110_150 Hb_001726_020 Hb_001726_020 Hb_001318_270--Hb_001726_020 Hb_000041_100 Hb_000041_100 Hb_001318_270--Hb_000041_100 Hb_050622_050 Hb_050622_050 Hb_001318_270--Hb_050622_050 Hb_000783_020 Hb_000783_020 Hb_001318_270--Hb_000783_020 Hb_004800_080 Hb_004800_080 Hb_002391_310--Hb_004800_080 Hb_000056_240 Hb_000056_240 Hb_002391_310--Hb_000056_240 Hb_000556_160 Hb_000556_160 Hb_002391_310--Hb_000556_160 Hb_000329_710 Hb_000329_710 Hb_002391_310--Hb_000329_710 Hb_000710_060 Hb_000710_060 Hb_002391_310--Hb_000710_060 Hb_002391_310--Hb_000041_100 Hb_002518_260 Hb_002518_260 Hb_009486_140--Hb_002518_260 Hb_000041_110 Hb_000041_110 Hb_009486_140--Hb_000041_110 Hb_009486_140--Hb_000329_710 Hb_011386_010 Hb_011386_010 Hb_009486_140--Hb_011386_010 Hb_156279_020 Hb_156279_020 Hb_009486_140--Hb_156279_020 Hb_005054_110 Hb_005054_110 Hb_009486_140--Hb_005054_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.17845 6.00466 4.51467 3.38873 3.76346 6.83121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.73777 7.22359 11.2549 6.97477 7.17517

CAGE analysis