Hb_002660_030

Information

Type -
Description -
Location Contig2660: 36915-37136
Sequence    

Annotation

kegg
ID rcu:RCOM_1355790
description hypothetical protein
nr
ID XP_002519532.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FGZ9
description Ubiquitin-like protein 5 OS=Arabidopsis thaliana GN=UBL5 PE=3 SV=1
trembl
ID B9S0L3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1355790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 045_E21.ab1: 36736-37190

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002660_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002713_070 0.0586695867 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
3 Hb_011311_010 0.0624149614 - - 60S ribosomal protein L27C [Hevea brasiliensis]
4 Hb_003226_210 0.0659529756 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
5 Hb_000134_070 0.0670820974 - - 60S ribosomal protein L6, putative [Ricinus communis]
6 Hb_026398_010 0.0711821086 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
7 Hb_002925_030 0.0717294712 - - 40S ribosomal protein S16B [Hevea brasiliensis]
8 Hb_000136_170 0.0733623973 - - PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
9 Hb_001505_020 0.0775650705 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
10 Hb_002835_320 0.0784241235 - - 60S ribosomal protein L27B [Hevea brasiliensis]
11 Hb_001863_090 0.0786182099 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
12 Hb_000617_090 0.0803602287 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
13 Hb_006816_530 0.0813845443 - - 60S ribosomal protein L18, putative [Ricinus communis]
14 Hb_001269_270 0.0819434186 - - 60S ribosomal protein L27B [Hevea brasiliensis]
15 Hb_004157_030 0.0820475565 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
16 Hb_001814_050 0.0823470512 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_172221_010 0.082424566 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
18 Hb_000526_040 0.0827561611 - - 60S ribosomal protein L6, putative [Ricinus communis]
19 Hb_004375_100 0.0832028526 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
20 Hb_001214_160 0.0841997307 - - 60S ribosomal protein L27B [Hevea brasiliensis]

Gene co-expression network

sample Hb_002660_030 Hb_002660_030 Hb_002713_070 Hb_002713_070 Hb_002660_030--Hb_002713_070 Hb_011311_010 Hb_011311_010 Hb_002660_030--Hb_011311_010 Hb_003226_210 Hb_003226_210 Hb_002660_030--Hb_003226_210 Hb_000134_070 Hb_000134_070 Hb_002660_030--Hb_000134_070 Hb_026398_010 Hb_026398_010 Hb_002660_030--Hb_026398_010 Hb_002925_030 Hb_002925_030 Hb_002660_030--Hb_002925_030 Hb_000136_170 Hb_000136_170 Hb_002713_070--Hb_000136_170 Hb_004375_100 Hb_004375_100 Hb_002713_070--Hb_004375_100 Hb_001505_020 Hb_001505_020 Hb_002713_070--Hb_001505_020 Hb_089839_020 Hb_089839_020 Hb_002713_070--Hb_089839_020 Hb_002713_070--Hb_002925_030 Hb_002588_010 Hb_002588_010 Hb_011311_010--Hb_002588_010 Hb_011311_010--Hb_026398_010 Hb_007944_040 Hb_007944_040 Hb_011311_010--Hb_007944_040 Hb_004724_160 Hb_004724_160 Hb_011311_010--Hb_004724_160 Hb_011311_010--Hb_002925_030 Hb_001214_160 Hb_001214_160 Hb_003226_210--Hb_001214_160 Hb_000283_110 Hb_000283_110 Hb_003226_210--Hb_000283_110 Hb_006816_530 Hb_006816_530 Hb_003226_210--Hb_006816_530 Hb_003226_210--Hb_000134_070 Hb_000363_480 Hb_000363_480 Hb_003226_210--Hb_000363_480 Hb_000134_070--Hb_000136_170 Hb_004157_030 Hb_004157_030 Hb_000134_070--Hb_004157_030 Hb_086639_090 Hb_086639_090 Hb_000134_070--Hb_086639_090 Hb_000134_070--Hb_001505_020 Hb_172221_010 Hb_172221_010 Hb_026398_010--Hb_172221_010 Hb_000329_020 Hb_000329_020 Hb_026398_010--Hb_000329_020 Hb_000042_260 Hb_000042_260 Hb_026398_010--Hb_000042_260 Hb_026398_010--Hb_002588_010 Hb_003398_120 Hb_003398_120 Hb_002925_030--Hb_003398_120 Hb_001998_050 Hb_001998_050 Hb_002925_030--Hb_001998_050 Hb_000227_230 Hb_000227_230 Hb_002925_030--Hb_000227_230 Hb_001863_090 Hb_001863_090 Hb_002925_030--Hb_001863_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
81.4792 27.5 44.1753 66.3016 64.6635 102.666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
153.268 339.33 107.745 92.5591 31.6257

CAGE analysis