Hb_002660_040

Information

Type -
Description -
Location Contig2660: 37598-39298
Sequence    

Annotation

kegg
ID rcu:RCOM_1355800
description hypothetical protein
nr
ID XP_012082358.1
description PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
swissprot
ID P0DI70
description CASP-like protein 5A1 OS=Ginkgo biloba GN=gba_locus_10451 PE=3 SV=1
trembl
ID A0A067K9Z9
description CASP-like protein OS=Jatropha curcas GN=JCGZ_16504 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein 5a1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27775: 36734-37190
cDNA
(Sanger)
(ID:Location)		 045_E21r.ab1: 36736-37190

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002660_040 0.0 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
2 Hb_000527_140 0.1104070695 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
3 Hb_064985_010 0.1150499509 - - Leucine-rich repeat transmembrane protein kinase, putative [Theobroma cacao]
4 Hb_005880_010 0.1183772258 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
5 Hb_002833_020 0.1232731396 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
6 Hb_001008_110 0.1247770118 - - -
7 Hb_006241_010 0.1251929234 desease resistance Gene Name: NB-ARC Disease resistance protein RFL1, putative [Ricinus communis]
8 Hb_000417_280 0.1271262313 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004218_160 0.127564469 - - NBS-LRR type disease resistance protein [Medicago truncatula]
10 Hb_009898_030 0.1285248754 - - PREDICTED: uncharacterized protein LOC103720281 [Phoenix dactylifera]
11 Hb_000120_310 0.1289936629 - - Gibberellin 3-beta-dioxygenase, putative [Ricinus communis]
12 Hb_025432_010 0.129406193 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
13 Hb_002030_170 0.1361884104 - - PREDICTED: calcium-transporting ATPase 1-like [Jatropha curcas]
14 Hb_001488_280 0.1403282334 - - hypothetical protein JCGZ_19947 [Jatropha curcas]
15 Hb_008175_030 0.1411663738 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
16 Hb_010174_190 0.1412111068 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
17 Hb_002662_090 0.1422501598 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
18 Hb_000778_020 0.142903257 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
19 Hb_033234_010 0.1481680197 desease resistance Gene Name: LRR_8 Disease resistance protein RPP8 [Theobroma cacao]
20 Hb_000638_090 0.1483952103 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_002660_040 Hb_002660_040 Hb_000527_140 Hb_000527_140 Hb_002660_040--Hb_000527_140 Hb_064985_010 Hb_064985_010 Hb_002660_040--Hb_064985_010 Hb_005880_010 Hb_005880_010 Hb_002660_040--Hb_005880_010 Hb_002833_020 Hb_002833_020 Hb_002660_040--Hb_002833_020 Hb_001008_110 Hb_001008_110 Hb_002660_040--Hb_001008_110 Hb_006241_010 Hb_006241_010 Hb_002660_040--Hb_006241_010 Hb_114684_010 Hb_114684_010 Hb_000527_140--Hb_114684_010 Hb_000527_140--Hb_064985_010 Hb_042202_020 Hb_042202_020 Hb_000527_140--Hb_042202_020 Hb_000527_140--Hb_001008_110 Hb_000847_020 Hb_000847_020 Hb_000527_140--Hb_000847_020 Hb_064985_010--Hb_001008_110 Hb_007894_030 Hb_007894_030 Hb_064985_010--Hb_007894_030 Hb_006634_090 Hb_006634_090 Hb_064985_010--Hb_006634_090 Hb_001636_010 Hb_001636_010 Hb_064985_010--Hb_001636_010 Hb_005649_010 Hb_005649_010 Hb_064985_010--Hb_005649_010 Hb_008175_030 Hb_008175_030 Hb_005880_010--Hb_008175_030 Hb_005880_010--Hb_002833_020 Hb_000778_020 Hb_000778_020 Hb_005880_010--Hb_000778_020 Hb_000261_320 Hb_000261_320 Hb_005880_010--Hb_000261_320 Hb_001369_160 Hb_001369_160 Hb_005880_010--Hb_001369_160 Hb_002833_020--Hb_001008_110 Hb_000417_280 Hb_000417_280 Hb_002833_020--Hb_000417_280 Hb_000100_210 Hb_000100_210 Hb_002833_020--Hb_000100_210 Hb_000085_380 Hb_000085_380 Hb_002833_020--Hb_000085_380 Hb_000120_310 Hb_000120_310 Hb_002833_020--Hb_000120_310 Hb_002833_020--Hb_042202_020 Hb_001008_110--Hb_000417_280 Hb_003142_060 Hb_003142_060 Hb_001008_110--Hb_003142_060 Hb_032717_010 Hb_032717_010 Hb_001008_110--Hb_032717_010 Hb_001008_110--Hb_042202_020 Hb_022501_020 Hb_022501_020 Hb_006241_010--Hb_022501_020 Hb_025432_010 Hb_025432_010 Hb_006241_010--Hb_025432_010 Hb_008226_120 Hb_008226_120 Hb_006241_010--Hb_008226_120 Hb_006241_010--Hb_064985_010 Hb_012807_060 Hb_012807_060 Hb_006241_010--Hb_012807_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.809902 9.65729 4.31795 4.42932 0.433691 0.573602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.355836 0.0931979 0.640931 10.1236 3.18671

CAGE analysis