Hb_002660_050

Information

Type -
Description -
Location Contig2660: 40969-44329
Sequence    

Annotation

kegg
ID pop:POPTR_0016s09120g
description POPTRDRAFT_777538; hypothetical protein
nr
ID XP_012082360.1
description PREDICTED: uncharacterized protein LOC105642218 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9IFN2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s09120g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27777: 40523-44288 , PASA_asmbl_27778: 40755-44070 , PASA_asmbl_27779: 43389-43551
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002660_050 0.0 - - PREDICTED: uncharacterized protein LOC105642218 [Jatropha curcas]
2 Hb_001504_080 0.1163118191 - - golgi snare 11 protein, putative [Ricinus communis]
3 Hb_004235_030 0.1245538064 - - alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]
4 Hb_004899_050 0.1261767903 - - PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
5 Hb_028420_020 0.1334512643 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
6 Hb_002112_040 0.1346080178 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
7 Hb_001998_230 0.1354833749 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
8 Hb_002284_050 0.1358716141 - - hypothetical protein POPTR_0002s00740g [Populus trichocarpa]
9 Hb_000107_310 0.139484436 - - PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Jatropha curcas]
10 Hb_000676_290 0.1402878719 - - PREDICTED: glutaredoxin-C3 [Jatropha curcas]
11 Hb_004336_050 0.1426502299 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
12 Hb_180301_010 0.1427615302 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
13 Hb_000641_020 0.1429009774 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
14 Hb_006816_210 0.1430021007 - - PREDICTED: GTP-binding protein SAR1A [Nelumbo nucifera]
15 Hb_004072_020 0.1436043022 - - PREDICTED: uncharacterized protein LOC105635274 [Jatropha curcas]
16 Hb_012653_040 0.143805263 - - UV-induced protein uvi31, putative [Ricinus communis]
17 Hb_005398_030 0.1439958689 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]
18 Hb_007763_060 0.1442694264 - - BnaA02g23510D [Brassica napus]
19 Hb_116894_020 0.1448459793 - - hypothetical protein POPTR_0008s07660g [Populus trichocarpa]
20 Hb_000172_030 0.1458156012 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002660_050 Hb_002660_050 Hb_001504_080 Hb_001504_080 Hb_002660_050--Hb_001504_080 Hb_004235_030 Hb_004235_030 Hb_002660_050--Hb_004235_030 Hb_004899_050 Hb_004899_050 Hb_002660_050--Hb_004899_050 Hb_028420_020 Hb_028420_020 Hb_002660_050--Hb_028420_020 Hb_002112_040 Hb_002112_040 Hb_002660_050--Hb_002112_040 Hb_001998_230 Hb_001998_230 Hb_002660_050--Hb_001998_230 Hb_004336_050 Hb_004336_050 Hb_001504_080--Hb_004336_050 Hb_180301_010 Hb_180301_010 Hb_001504_080--Hb_180301_010 Hb_012653_040 Hb_012653_040 Hb_001504_080--Hb_012653_040 Hb_037887_010 Hb_037887_010 Hb_001504_080--Hb_037887_010 Hb_000083_170 Hb_000083_170 Hb_001504_080--Hb_000083_170 Hb_005588_070 Hb_005588_070 Hb_001504_080--Hb_005588_070 Hb_004235_030--Hb_028420_020 Hb_000927_020 Hb_000927_020 Hb_004235_030--Hb_000927_020 Hb_003688_110 Hb_003688_110 Hb_004235_030--Hb_003688_110 Hb_005016_050 Hb_005016_050 Hb_004235_030--Hb_005016_050 Hb_004235_030--Hb_004899_050 Hb_007002_030 Hb_007002_030 Hb_004899_050--Hb_007002_030 Hb_000053_100 Hb_000053_100 Hb_004899_050--Hb_000053_100 Hb_002596_040 Hb_002596_040 Hb_004899_050--Hb_002596_040 Hb_002893_080 Hb_002893_080 Hb_004899_050--Hb_002893_080 Hb_007317_180 Hb_007317_180 Hb_004899_050--Hb_007317_180 Hb_000994_120 Hb_000994_120 Hb_004899_050--Hb_000994_120 Hb_003912_090 Hb_003912_090 Hb_028420_020--Hb_003912_090 Hb_021238_050 Hb_021238_050 Hb_028420_020--Hb_021238_050 Hb_005862_010 Hb_005862_010 Hb_028420_020--Hb_005862_010 Hb_020665_040 Hb_020665_040 Hb_028420_020--Hb_020665_040 Hb_028420_020--Hb_005016_050 Hb_003038_210 Hb_003038_210 Hb_028420_020--Hb_003038_210 Hb_002112_040--Hb_001998_230 Hb_000363_500 Hb_000363_500 Hb_002112_040--Hb_000363_500 Hb_004072_020 Hb_004072_020 Hb_002112_040--Hb_004072_020 Hb_000676_290 Hb_000676_290 Hb_002112_040--Hb_000676_290 Hb_002616_050 Hb_002616_050 Hb_002112_040--Hb_002616_050 Hb_004128_190 Hb_004128_190 Hb_002112_040--Hb_004128_190 Hb_010180_010 Hb_010180_010 Hb_001998_230--Hb_010180_010 Hb_001998_230--Hb_004072_020 Hb_024714_100 Hb_024714_100 Hb_001998_230--Hb_024714_100 Hb_001998_230--Hb_000363_500 Hb_012799_160 Hb_012799_160 Hb_001998_230--Hb_012799_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.89979 2.34897 4.51301 23.7449 15.8486 39.8029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.7049 20.6385 20.4052 9.33322 10.6796

CAGE analysis