Hb_002660_070

Information

Type -
Description -
Location Contig2660: 53359-59247
Sequence    

Annotation

kegg
ID egr:104449011
description gamma carbonic anhydrase 1, mitochondrial
nr
ID XP_010061298.1
description PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
swissprot
ID Q9FWR5
description Gamma carbonic anhydrase 1, mitochondrial OS=Arabidopsis thaliana GN=GAMMACA1 PE=1 SV=1
trembl
ID A0A059BQC4
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01883 PE=4 SV=1
Gene Ontology
ID GO:0005747
description gamma carbonic anhydrase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27782: 53397-54178 , PASA_asmbl_27783: 53685-59300 , PASA_asmbl_27784: 56056-56390
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002660_070 0.0 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
2 Hb_000120_960 0.0667387772 - - isocitrate dehydrogenase, putative [Ricinus communis]
3 Hb_008616_070 0.0673590875 - - PREDICTED: trafficking protein particle complex subunit 8 isoform X1 [Jatropha curcas]
4 Hb_001507_040 0.0732391032 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000086_280 0.0816120852 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
6 Hb_065525_090 0.0819536747 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
7 Hb_020805_130 0.0862994986 - - protein phosphatase 2c, putative [Ricinus communis]
8 Hb_001776_160 0.0875759111 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
9 Hb_001279_340 0.0876993453 - - glycerol-3-phosphate dehydrogenase [Jatropha curcas]
10 Hb_001663_050 0.0882297343 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]
11 Hb_000240_090 0.0917458979 - - Rab5 [Hevea brasiliensis]
12 Hb_006831_120 0.0935267048 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
13 Hb_003349_090 0.0941024235 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
14 Hb_034406_030 0.0950001916 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Musa acuminata subsp. malaccensis]
15 Hb_000373_130 0.0951923561 - - PREDICTED: protein FAM188A [Jatropha curcas]
16 Hb_000108_070 0.0957374177 - - alpha-tubulin 1 [Hevea brasiliensis]
17 Hb_028515_010 0.0959452782 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
18 Hb_000638_250 0.09804697 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_003540_030 0.0991679682 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
20 Hb_003053_020 0.0997610244 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]

Gene co-expression network

sample Hb_002660_070 Hb_002660_070 Hb_000120_960 Hb_000120_960 Hb_002660_070--Hb_000120_960 Hb_008616_070 Hb_008616_070 Hb_002660_070--Hb_008616_070 Hb_001507_040 Hb_001507_040 Hb_002660_070--Hb_001507_040 Hb_000086_280 Hb_000086_280 Hb_002660_070--Hb_000086_280 Hb_065525_090 Hb_065525_090 Hb_002660_070--Hb_065525_090 Hb_020805_130 Hb_020805_130 Hb_002660_070--Hb_020805_130 Hb_010407_180 Hb_010407_180 Hb_000120_960--Hb_010407_180 Hb_000120_960--Hb_000086_280 Hb_003540_030 Hb_003540_030 Hb_000120_960--Hb_003540_030 Hb_000120_960--Hb_020805_130 Hb_007044_120 Hb_007044_120 Hb_000120_960--Hb_007044_120 Hb_008616_070--Hb_001507_040 Hb_008616_070--Hb_020805_130 Hb_004705_120 Hb_004705_120 Hb_008616_070--Hb_004705_120 Hb_001904_090 Hb_001904_090 Hb_008616_070--Hb_001904_090 Hb_015778_010 Hb_015778_010 Hb_008616_070--Hb_015778_010 Hb_001507_040--Hb_020805_130 Hb_000445_040 Hb_000445_040 Hb_001507_040--Hb_000445_040 Hb_000165_160 Hb_000165_160 Hb_001507_040--Hb_000165_160 Hb_006615_020 Hb_006615_020 Hb_001507_040--Hb_006615_020 Hb_001085_120 Hb_001085_120 Hb_000086_280--Hb_001085_120 Hb_001776_160 Hb_001776_160 Hb_000086_280--Hb_001776_160 Hb_000638_250 Hb_000638_250 Hb_000086_280--Hb_000638_250 Hb_000261_140 Hb_000261_140 Hb_000086_280--Hb_000261_140 Hb_000240_090 Hb_000240_090 Hb_000086_280--Hb_000240_090 Hb_000453_120 Hb_000453_120 Hb_000086_280--Hb_000453_120 Hb_034406_030 Hb_034406_030 Hb_065525_090--Hb_034406_030 Hb_001545_160 Hb_001545_160 Hb_065525_090--Hb_001545_160 Hb_065525_090--Hb_020805_130 Hb_002835_180 Hb_002835_180 Hb_065525_090--Hb_002835_180 Hb_065525_090--Hb_000120_960 Hb_001959_190 Hb_001959_190 Hb_020805_130--Hb_001959_190 Hb_009803_050 Hb_009803_050 Hb_020805_130--Hb_009803_050 Hb_003053_020 Hb_003053_020 Hb_020805_130--Hb_003053_020 Hb_000603_080 Hb_000603_080 Hb_020805_130--Hb_000603_080 Hb_002027_040 Hb_002027_040 Hb_020805_130--Hb_002027_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.4342 20.6691 26.4881 25.4343 20.461 18.9027
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.7895 59.3848 78.057 34.2054 22.0433

CAGE analysis