Hb_002660_100

Information

Type -
Description -
Location Contig2660: 75867-77476
Sequence    

Annotation

kegg
ID rcu:RCOM_1356060
description Aquaporin PIP2.2, putative
nr
ID ACX37450.1
description plasma membrane intrinsic protein [Hevea brasiliensis]
swissprot
ID Q9ATM6
description Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1
trembl
ID C9WSP8
description Plasma membrane intrinsic protein OS=Hevea brasiliensis GN=PIP2;1 PE=2 SV=1
Gene Ontology
ID GO:0016021
description aquaporin pip2-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27787: 75993-77485 , PASA_asmbl_27788: 75993-77453
cDNA
(Sanger)
(ID:Location)		 020_L23.ab1: 75999-76997

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002660_100 0.0 - - plasma membrane intrinsic protein [Hevea brasiliensis]
2 Hb_000608_020 0.1374825028 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
3 Hb_004195_170 0.1506754212 - - ATP binding protein, putative [Ricinus communis]
4 Hb_051100_010 0.1742210517 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
5 Hb_165130_010 0.1763189411 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]
6 Hb_001148_040 0.1781668278 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
7 Hb_000429_110 0.1808147228 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2-like [Populus euphratica]
8 Hb_001259_100 0.1823467245 - - chloride channel-like family protein [Populus trichocarpa]
9 Hb_003453_030 0.1872637714 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
10 Hb_001558_070 0.1888982083 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
11 Hb_000685_060 0.1898564485 - - ring finger protein, putative [Ricinus communis]
12 Hb_068332_010 0.1905809845 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
13 Hb_000844_010 0.1923288527 - - PREDICTED: lysine histidine transporter-like 8 [Jatropha curcas]
14 Hb_005288_030 0.1929095963 - - PREDICTED: uncharacterized protein LOC105647760 [Jatropha curcas]
15 Hb_001377_500 0.1972104903 - - DOF AFFECTING GERMINATION 2 family protein [Populus trichocarpa]
16 Hb_000000_140 0.1974936021 - - -
17 Hb_164010_090 0.1978048252 - - cellulose synthase, putative [Ricinus communis]
18 Hb_002928_180 0.1987128636 - - catalase CAT1 [Manihot esculenta]
19 Hb_001481_020 0.2002951765 - - PREDICTED: L-type lectin-domain containing receptor kinase V.9-like [Jatropha curcas]
20 Hb_001073_060 0.2013983146 - - phosphate transporter 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_002660_100 Hb_002660_100 Hb_000608_020 Hb_000608_020 Hb_002660_100--Hb_000608_020 Hb_004195_170 Hb_004195_170 Hb_002660_100--Hb_004195_170 Hb_051100_010 Hb_051100_010 Hb_002660_100--Hb_051100_010 Hb_165130_010 Hb_165130_010 Hb_002660_100--Hb_165130_010 Hb_001148_040 Hb_001148_040 Hb_002660_100--Hb_001148_040 Hb_000429_110 Hb_000429_110 Hb_002660_100--Hb_000429_110 Hb_001377_500 Hb_001377_500 Hb_000608_020--Hb_001377_500 Hb_000608_020--Hb_000429_110 Hb_001558_070 Hb_001558_070 Hb_000608_020--Hb_001558_070 Hb_001259_100 Hb_001259_100 Hb_000608_020--Hb_001259_100 Hb_002928_180 Hb_002928_180 Hb_000608_020--Hb_002928_180 Hb_003453_030 Hb_003453_030 Hb_004195_170--Hb_003453_030 Hb_000086_370 Hb_000086_370 Hb_004195_170--Hb_000086_370 Hb_012807_060 Hb_012807_060 Hb_004195_170--Hb_012807_060 Hb_022501_020 Hb_022501_020 Hb_004195_170--Hb_022501_020 Hb_000657_030 Hb_000657_030 Hb_004195_170--Hb_000657_030 Hb_001408_050 Hb_001408_050 Hb_004195_170--Hb_001408_050 Hb_135811_060 Hb_135811_060 Hb_051100_010--Hb_135811_060 Hb_000521_210 Hb_000521_210 Hb_051100_010--Hb_000521_210 Hb_005380_030 Hb_005380_030 Hb_051100_010--Hb_005380_030 Hb_015473_010 Hb_015473_010 Hb_051100_010--Hb_015473_010 Hb_000856_240 Hb_000856_240 Hb_051100_010--Hb_000856_240 Hb_000172_010 Hb_000172_010 Hb_051100_010--Hb_000172_010 Hb_000189_120 Hb_000189_120 Hb_165130_010--Hb_000189_120 Hb_003576_050 Hb_003576_050 Hb_165130_010--Hb_003576_050 Hb_165130_010--Hb_002928_180 Hb_002928_120 Hb_002928_120 Hb_165130_010--Hb_002928_120 Hb_011310_200 Hb_011310_200 Hb_165130_010--Hb_011310_200 Hb_000007_160 Hb_000007_160 Hb_001148_040--Hb_000007_160 Hb_140848_010 Hb_140848_010 Hb_001148_040--Hb_140848_010 Hb_010381_110 Hb_010381_110 Hb_001148_040--Hb_010381_110 Hb_008406_020 Hb_008406_020 Hb_001148_040--Hb_008406_020 Hb_002609_150 Hb_002609_150 Hb_001148_040--Hb_002609_150 Hb_000778_020 Hb_000778_020 Hb_001148_040--Hb_000778_020 Hb_000429_110--Hb_002928_180 Hb_052764_080 Hb_052764_080 Hb_000429_110--Hb_052764_080 Hb_000429_110--Hb_001259_100 Hb_000429_110--Hb_002928_120 Hb_010174_190 Hb_010174_190 Hb_000429_110--Hb_010174_190 Hb_001355_070 Hb_001355_070 Hb_000429_110--Hb_001355_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.4686 480.769 43.609 209.949 34.2183 2.06579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.94172 5.46737 51.6824 334.307 11.6105

CAGE analysis