Hb_002660_140

Information

Type -
Description -
Location Contig2660: 124956-128528
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13060g
description hypothetical protein
nr
ID XP_006381461.1
description hypothetical protein POPTR_0006s13060g [Populus trichocarpa]
swissprot
ID Q9S752
description Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana GN=LOG2 PE=1 SV=1
trembl
ID U5G6U7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s13060g PE=4 SV=1
Gene Ontology
ID GO:0008270
description probable e3 ubiquitin-protein ligase log2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27793: 125093-128368 , PASA_asmbl_27794: 125093-127890
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002660_140 0.0 - - hypothetical protein POPTR_0006s13060g [Populus trichocarpa]
2 Hb_017434_090 0.090117945 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001493_100 0.0917183544 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
4 Hb_005754_020 0.1030448134 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
5 Hb_000714_020 0.1045791638 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
6 Hb_000784_090 0.1054751323 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
7 Hb_008725_250 0.1056978837 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
8 Hb_002044_090 0.1086848203 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
9 Hb_004232_010 0.1088009415 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
10 Hb_033491_010 0.1088162306 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
11 Hb_011609_030 0.1093068529 - - conserved hypothetical protein 13 [Hevea brasiliensis]
12 Hb_000176_140 0.1130027027 - - PREDICTED: bystin [Jatropha curcas]
13 Hb_000282_060 0.1133242541 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
14 Hb_004813_010 0.1146504874 - - nucleic acid binding protein, putative [Ricinus communis]
15 Hb_002249_140 0.1164089289 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
16 Hb_003428_110 0.1169943391 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
17 Hb_000359_170 0.117647823 - - hypothetical protein CISIN_1g014750mg [Citrus sinensis]
18 Hb_001269_150 0.1186339978 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
19 Hb_002783_230 0.1188540915 - - neutral/alkaline invertase [Manihot esculenta]
20 Hb_001141_080 0.1208715726 - - PREDICTED: protein RDM1 [Jatropha curcas]

Gene co-expression network

sample Hb_002660_140 Hb_002660_140 Hb_017434_090 Hb_017434_090 Hb_002660_140--Hb_017434_090 Hb_001493_100 Hb_001493_100 Hb_002660_140--Hb_001493_100 Hb_005754_020 Hb_005754_020 Hb_002660_140--Hb_005754_020 Hb_000714_020 Hb_000714_020 Hb_002660_140--Hb_000714_020 Hb_000784_090 Hb_000784_090 Hb_002660_140--Hb_000784_090 Hb_008725_250 Hb_008725_250 Hb_002660_140--Hb_008725_250 Hb_000282_060 Hb_000282_060 Hb_017434_090--Hb_000282_060 Hb_003428_110 Hb_003428_110 Hb_017434_090--Hb_003428_110 Hb_000732_260 Hb_000732_260 Hb_017434_090--Hb_000732_260 Hb_017434_090--Hb_005754_020 Hb_004032_440 Hb_004032_440 Hb_017434_090--Hb_004032_440 Hb_004813_010 Hb_004813_010 Hb_001493_100--Hb_004813_010 Hb_178968_150 Hb_178968_150 Hb_001493_100--Hb_178968_150 Hb_000028_470 Hb_000028_470 Hb_001493_100--Hb_000028_470 Hb_001269_150 Hb_001269_150 Hb_001493_100--Hb_001269_150 Hb_001493_100--Hb_000714_020 Hb_001493_100--Hb_000784_090 Hb_002044_090 Hb_002044_090 Hb_005754_020--Hb_002044_090 Hb_000062_230 Hb_000062_230 Hb_005754_020--Hb_000062_230 Hb_002377_040 Hb_002377_040 Hb_005754_020--Hb_002377_040 Hb_005754_020--Hb_000028_470 Hb_003352_050 Hb_003352_050 Hb_005754_020--Hb_003352_050 Hb_000176_140 Hb_000176_140 Hb_005754_020--Hb_000176_140 Hb_011609_030 Hb_011609_030 Hb_000714_020--Hb_011609_030 Hb_001623_370 Hb_001623_370 Hb_000714_020--Hb_001623_370 Hb_001514_020 Hb_001514_020 Hb_000714_020--Hb_001514_020 Hb_002619_010 Hb_002619_010 Hb_000714_020--Hb_002619_010 Hb_004374_010 Hb_004374_010 Hb_000714_020--Hb_004374_010 Hb_033491_010 Hb_033491_010 Hb_000784_090--Hb_033491_010 Hb_000481_010 Hb_000481_010 Hb_000784_090--Hb_000481_010 Hb_002215_050 Hb_002215_050 Hb_000784_090--Hb_002215_050 Hb_002249_140 Hb_002249_140 Hb_000784_090--Hb_002249_140 Hb_001369_060 Hb_001369_060 Hb_000784_090--Hb_001369_060 Hb_005147_110 Hb_005147_110 Hb_008725_250--Hb_005147_110 Hb_004310_060 Hb_004310_060 Hb_008725_250--Hb_004310_060 Hb_005914_230 Hb_005914_230 Hb_008725_250--Hb_005914_230 Hb_008725_250--Hb_002249_140 Hb_000359_170 Hb_000359_170 Hb_008725_250--Hb_000359_170 Hb_012305_070 Hb_012305_070 Hb_008725_250--Hb_012305_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
416.499 118.145 16.6946 56.3152 294.382 308.296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
346.579 173.583 141.745 32.7195 20.6197

CAGE analysis