Hb_002660_180

Information

Type -
Description -
Location Contig2660: 151970-152692
Sequence    

Annotation

kegg
ID rcu:RCOM_1356640
description hypothetical protein
nr
ID XP_002519547.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8LEJ6
description Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana GN=FLA11 PE=2 SV=2
trembl
ID B9S0M8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1356640 PE=4 SV=1
Gene Ontology
ID GO:0005886
description fasciclin-like arabinogalactan protein 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 043_G24.ab1: 151905-152730

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002660_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000696_130 0.0373076201 - - nucleic acid binding protein, putative [Ricinus communis]
3 Hb_002636_170 0.042873567 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]
4 Hb_024074_030 0.0501321326 - - hypothetical protein CISIN_1g043166mg [Citrus sinensis]
5 Hb_000037_150 0.0526787744 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
6 Hb_001307_180 0.0528514794 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
7 Hb_000422_090 0.0562338403 - - conserved hypothetical protein [Ricinus communis]
8 Hb_011912_010 0.0573746545 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
9 Hb_004846_110 0.0634636967 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
10 Hb_001477_050 0.0696747807 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
11 Hb_003645_040 0.0756036927 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
12 Hb_000836_640 0.0781451593 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
13 Hb_019953_010 0.0809847618 - - hypothetical protein CICLE_v10019877mg [Citrus clementina]
14 Hb_012633_020 0.0847167664 - - laccase, putative [Ricinus communis]
15 Hb_005056_040 0.0868551841 - - hypothetical protein POPTR_0007s14730g [Populus trichocarpa]
16 Hb_000684_190 0.0886153361 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
17 Hb_000964_080 0.0889579509 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
18 Hb_000413_030 0.0894609692 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
19 Hb_006634_120 0.0908050548 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
20 Hb_070771_010 0.0923816157 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]

Gene co-expression network

sample Hb_002660_180 Hb_002660_180 Hb_000696_130 Hb_000696_130 Hb_002660_180--Hb_000696_130 Hb_002636_170 Hb_002636_170 Hb_002660_180--Hb_002636_170 Hb_024074_030 Hb_024074_030 Hb_002660_180--Hb_024074_030 Hb_000037_150 Hb_000037_150 Hb_002660_180--Hb_000037_150 Hb_001307_180 Hb_001307_180 Hb_002660_180--Hb_001307_180 Hb_000422_090 Hb_000422_090 Hb_002660_180--Hb_000422_090 Hb_000696_130--Hb_002636_170 Hb_000696_130--Hb_000422_090 Hb_000696_130--Hb_000037_150 Hb_000696_130--Hb_024074_030 Hb_019953_010 Hb_019953_010 Hb_000696_130--Hb_019953_010 Hb_002636_170--Hb_000422_090 Hb_002636_170--Hb_019953_010 Hb_002636_170--Hb_000037_150 Hb_002636_170--Hb_024074_030 Hb_024074_030--Hb_000037_150 Hb_001477_050 Hb_001477_050 Hb_024074_030--Hb_001477_050 Hb_024074_030--Hb_001307_180 Hb_011912_010 Hb_011912_010 Hb_000037_150--Hb_011912_010 Hb_000037_150--Hb_001477_050 Hb_004846_110 Hb_004846_110 Hb_000037_150--Hb_004846_110 Hb_001307_180--Hb_011912_010 Hb_003645_040 Hb_003645_040 Hb_001307_180--Hb_003645_040 Hb_012633_020 Hb_012633_020 Hb_001307_180--Hb_012633_020 Hb_070771_010 Hb_070771_010 Hb_001307_180--Hb_070771_010 Hb_000836_640 Hb_000836_640 Hb_001307_180--Hb_000836_640 Hb_000684_190 Hb_000684_190 Hb_000422_090--Hb_000684_190 Hb_002734_020 Hb_002734_020 Hb_000422_090--Hb_002734_020 Hb_001856_250 Hb_001856_250 Hb_000422_090--Hb_001856_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0757928 21.3613 28.3203 1384.95 0.622429 0.215142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.108921 0.790843 566.032

CAGE analysis