Hb_002662_020

Information

Type -
Description -
Location Contig2662: 32331-33929
Sequence    

Annotation

kegg
ID rcu:RCOM_1589320
description skip-2, putative
nr
ID XP_012068294.1
description PREDICTED: F-box protein At1g47056-like [Jatropha curcas]
swissprot
ID Q9C626
description F-box protein At1g47056 OS=Arabidopsis thaliana GN=At1g47056 PE=2 SV=1
trembl
ID A0A067LC82
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16096 PE=4 SV=1
Gene Ontology
ID GO:0004842
description f-box protein at1g47056-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27806: 32034-34234
cDNA
(Sanger)
(ID:Location)		 010_C09.ab1: 32123-32799

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002662_020 0.0 - - PREDICTED: F-box protein At1g47056-like [Jatropha curcas]
2 Hb_005269_040 0.0801923138 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g06270 [Jatropha curcas]
3 Hb_032808_030 0.0809857474 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
4 Hb_004143_040 0.0813253459 - - argininosuccinate lyase, putative [Ricinus communis]
5 Hb_000116_410 0.0813891951 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
6 Hb_002026_210 0.0846988585 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
7 Hb_000347_180 0.0863843541 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
8 Hb_001492_020 0.0876083913 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
9 Hb_001635_090 0.0887308188 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
10 Hb_001377_270 0.0896744208 - - hypothetical protein CICLE_v10021159mg [Citrus clementina]
11 Hb_000080_150 0.0905231874 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
12 Hb_028512_020 0.090975415 - - PREDICTED: protein S-acyltransferase 11 isoform X2 [Jatropha curcas]
13 Hb_074715_010 0.0921724926 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
14 Hb_000640_120 0.0924492403 - - PREDICTED: uncharacterized protein LOC105642625 [Jatropha curcas]
15 Hb_000890_210 0.0928610582 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
16 Hb_002111_070 0.093744206 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
17 Hb_000213_120 0.0939999884 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_000191_150 0.0943105714 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
19 Hb_002235_170 0.0954559293 - - hypothetical protein CISIN_1g010208mg [Citrus sinensis]
20 Hb_000173_490 0.0972397559 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002662_020 Hb_002662_020 Hb_005269_040 Hb_005269_040 Hb_002662_020--Hb_005269_040 Hb_032808_030 Hb_032808_030 Hb_002662_020--Hb_032808_030 Hb_004143_040 Hb_004143_040 Hb_002662_020--Hb_004143_040 Hb_000116_410 Hb_000116_410 Hb_002662_020--Hb_000116_410 Hb_002026_210 Hb_002026_210 Hb_002662_020--Hb_002026_210 Hb_000347_180 Hb_000347_180 Hb_002662_020--Hb_000347_180 Hb_144528_010 Hb_144528_010 Hb_005269_040--Hb_144528_010 Hb_001377_270 Hb_001377_270 Hb_005269_040--Hb_001377_270 Hb_001538_130 Hb_001538_130 Hb_005269_040--Hb_001538_130 Hb_000192_080 Hb_000192_080 Hb_005269_040--Hb_000192_080 Hb_074715_010 Hb_074715_010 Hb_005269_040--Hb_074715_010 Hb_000236_410 Hb_000236_410 Hb_032808_030--Hb_000236_410 Hb_000213_120 Hb_000213_120 Hb_032808_030--Hb_000213_120 Hb_000925_140 Hb_000925_140 Hb_032808_030--Hb_000925_140 Hb_000105_040 Hb_000105_040 Hb_032808_030--Hb_000105_040 Hb_001105_160 Hb_001105_160 Hb_032808_030--Hb_001105_160 Hb_000023_280 Hb_000023_280 Hb_004143_040--Hb_000023_280 Hb_004143_040--Hb_000116_410 Hb_003373_030 Hb_003373_030 Hb_004143_040--Hb_003373_030 Hb_003761_010 Hb_003761_010 Hb_004143_040--Hb_003761_010 Hb_001205_240 Hb_001205_240 Hb_004143_040--Hb_001205_240 Hb_001635_090 Hb_001635_090 Hb_000116_410--Hb_001635_090 Hb_010142_030 Hb_010142_030 Hb_000116_410--Hb_010142_030 Hb_000191_150 Hb_000191_150 Hb_000116_410--Hb_000191_150 Hb_001178_070 Hb_001178_070 Hb_000116_410--Hb_001178_070 Hb_028285_010 Hb_028285_010 Hb_000116_410--Hb_028285_010 Hb_028512_020 Hb_028512_020 Hb_002026_210--Hb_028512_020 Hb_011849_040 Hb_011849_040 Hb_002026_210--Hb_011849_040 Hb_000009_500 Hb_000009_500 Hb_002026_210--Hb_000009_500 Hb_000614_210 Hb_000614_210 Hb_002026_210--Hb_000614_210 Hb_000923_010 Hb_000923_010 Hb_002026_210--Hb_000923_010 Hb_000340_530 Hb_000340_530 Hb_002026_210--Hb_000340_530 Hb_000457_260 Hb_000457_260 Hb_000347_180--Hb_000457_260 Hb_001097_050 Hb_001097_050 Hb_000347_180--Hb_001097_050 Hb_123352_020 Hb_123352_020 Hb_000347_180--Hb_123352_020 Hb_002255_030 Hb_002255_030 Hb_000347_180--Hb_002255_030 Hb_004935_030 Hb_004935_030 Hb_000347_180--Hb_004935_030 Hb_000347_180--Hb_001377_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.2781 26.0231 7.72077 26.3597 17.4973 27.7161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.6148 15.0936 14.2338 21.6654 11.3988

CAGE analysis