Hb_002671_100

Information

Type -
Description -
Location Contig2671: 176149-177956
Sequence    

Annotation

kegg
ID rcu:RCOM_0751510
description tRNA (guanine-n(7)-)-methyltransferase, putative (EC:2.1.1.33)
nr
ID XP_012086123.1
description PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
swissprot
ID Q8GXB7
description tRNA (guanine-N(7)-)-methyltransferase OS=Arabidopsis thaliana GN=At5g24840 PE=2 SV=1
trembl
ID B9SUG0
description tRNA (guanine-N(7)-)-methyltransferase OS=Ricinus communis GN=RCOM_0751510 PE=3 SV=1
Gene Ontology
ID GO:0005634
description trna (guanine-n -)-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27834: 176132-177928
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002671_100 0.0 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
2 Hb_007594_130 0.0583834847 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
3 Hb_040262_010 0.0643271634 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
4 Hb_004881_020 0.0704538619 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
5 Hb_144598_030 0.0725144067 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
6 Hb_004117_130 0.0730616951 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
7 Hb_000260_170 0.0734716752 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
8 Hb_001689_020 0.0753063827 - - hypothetical protein JCGZ_10660 [Jatropha curcas]
9 Hb_005016_170 0.0760807806 - - conserved hypothetical protein [Ricinus communis]
10 Hb_020719_030 0.0761556532 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
11 Hb_000212_240 0.0784627477 - - short-chain dehydrogenase, putative [Ricinus communis]
12 Hb_103012_010 0.081348078 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
13 Hb_001369_180 0.0837861644 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
14 Hb_000123_090 0.0839354967 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
15 Hb_003502_080 0.0853498892 - - vacuolar protein sorting, putative [Ricinus communis]
16 Hb_001935_130 0.0864060952 - - PREDICTED: uncharacterized protein LOC105643176 [Jatropha curcas]
17 Hb_003030_070 0.0866824694 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
18 Hb_000526_050 0.0867524317 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
19 Hb_002272_180 0.0869920093 - - hypothetical protein JCGZ_23380 [Jatropha curcas]
20 Hb_007059_010 0.087014057 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]

Gene co-expression network

sample Hb_002671_100 Hb_002671_100 Hb_007594_130 Hb_007594_130 Hb_002671_100--Hb_007594_130 Hb_040262_010 Hb_040262_010 Hb_002671_100--Hb_040262_010 Hb_004881_020 Hb_004881_020 Hb_002671_100--Hb_004881_020 Hb_144598_030 Hb_144598_030 Hb_002671_100--Hb_144598_030 Hb_004117_130 Hb_004117_130 Hb_002671_100--Hb_004117_130 Hb_000260_170 Hb_000260_170 Hb_002671_100--Hb_000260_170 Hb_007594_130--Hb_004881_020 Hb_003952_070 Hb_003952_070 Hb_007594_130--Hb_003952_070 Hb_000212_240 Hb_000212_240 Hb_007594_130--Hb_000212_240 Hb_003030_070 Hb_003030_070 Hb_007594_130--Hb_003030_070 Hb_007594_130--Hb_040262_010 Hb_103012_010 Hb_103012_010 Hb_040262_010--Hb_103012_010 Hb_001946_010 Hb_001946_010 Hb_040262_010--Hb_001946_010 Hb_007317_110 Hb_007317_110 Hb_040262_010--Hb_007317_110 Hb_040262_010--Hb_000260_170 Hb_004881_020--Hb_003952_070 Hb_006252_040 Hb_006252_040 Hb_004881_020--Hb_006252_040 Hb_004881_020--Hb_000212_240 Hb_004881_020--Hb_103012_010 Hb_020665_040 Hb_020665_040 Hb_144598_030--Hb_020665_040 Hb_144598_030--Hb_007594_130 Hb_144598_030--Hb_004117_130 Hb_144598_030--Hb_004881_020 Hb_002716_130 Hb_002716_130 Hb_144598_030--Hb_002716_130 Hb_004117_130--Hb_002716_130 Hb_020719_030 Hb_020719_030 Hb_004117_130--Hb_020719_030 Hb_004117_130--Hb_000260_170 Hb_000933_090 Hb_000933_090 Hb_004117_130--Hb_000933_090 Hb_007044_080 Hb_007044_080 Hb_004117_130--Hb_007044_080 Hb_000023_220 Hb_000023_220 Hb_004117_130--Hb_000023_220 Hb_000260_170--Hb_001946_010 Hb_000260_170--Hb_103012_010 Hb_000260_170--Hb_020719_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7064 4.83763 5.11792 10.8622 13.8276 17.1867
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4324 9.30257 5.55719 7.58663 4.90176

CAGE analysis