Hb_002671_110

Information

Type -
Description -
Location Contig2671: 182508-184627
Sequence    

Annotation

kegg
ID pop:POPTR_0006s05180g
description POPTRDRAFT_416893; hypothetical protein
nr
ID XP_012086135.1
description PREDICTED: remorin-like [Jatropha curcas]
swissprot
ID P93788
description Remorin OS=Solanum tuberosum PE=1 SV=1
trembl
ID A0A067K1A1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21068 PE=4 SV=1
Gene Ontology
ID GO:0003824
description remorin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27835: 182689-184083
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002671_110 0.0 - - PREDICTED: remorin-like [Jatropha curcas]
2 Hb_005228_170 0.0628747183 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
3 Hb_000238_060 0.0821437294 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
4 Hb_005218_070 0.0845706949 transcription factor TF Family: MYB PREDICTED: transcription factor RAX3 isoform X2 [Populus euphratica]
5 Hb_000237_150 0.0874348535 - - Epoxide hydrolase 2 [Morus notabilis]
6 Hb_001405_100 0.0883743294 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
7 Hb_002081_040 0.0949650012 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
8 Hb_001638_110 0.1015811015 - - conserved hypothetical protein [Ricinus communis]
9 Hb_161393_010 0.1046116555 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_000649_030 0.1075402347 - - scab resistance family protein [Populus trichocarpa]
11 Hb_000616_050 0.1076773007 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
12 Hb_019229_020 0.1119707651 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
13 Hb_166813_010 0.1126771001 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
14 Hb_000081_020 0.1156731861 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
15 Hb_000852_050 0.1173014675 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
16 Hb_002475_020 0.1183894743 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Populus euphratica]
17 Hb_001838_050 0.1202744713 - - hypothetical protein B456_007G218500 [Gossypium raimondii]
18 Hb_002553_120 0.1208106142 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
19 Hb_005653_020 0.1212733484 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
20 Hb_000539_080 0.1220706426 - - hypothetical protein POPTR_0039s00260g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_002671_110 Hb_002671_110 Hb_005228_170 Hb_005228_170 Hb_002671_110--Hb_005228_170 Hb_000238_060 Hb_000238_060 Hb_002671_110--Hb_000238_060 Hb_005218_070 Hb_005218_070 Hb_002671_110--Hb_005218_070 Hb_000237_150 Hb_000237_150 Hb_002671_110--Hb_000237_150 Hb_001405_100 Hb_001405_100 Hb_002671_110--Hb_001405_100 Hb_002081_040 Hb_002081_040 Hb_002671_110--Hb_002081_040 Hb_005228_170--Hb_002081_040 Hb_005228_170--Hb_005218_070 Hb_000302_060 Hb_000302_060 Hb_005228_170--Hb_000302_060 Hb_161393_010 Hb_161393_010 Hb_005228_170--Hb_161393_010 Hb_002204_030 Hb_002204_030 Hb_005228_170--Hb_002204_030 Hb_000238_060--Hb_001405_100 Hb_000238_060--Hb_000237_150 Hb_000852_050 Hb_000852_050 Hb_000238_060--Hb_000852_050 Hb_000081_020 Hb_000081_020 Hb_000238_060--Hb_000081_020 Hb_000238_060--Hb_005228_170 Hb_005218_070--Hb_002204_030 Hb_005218_070--Hb_000302_060 Hb_002475_020 Hb_002475_020 Hb_005218_070--Hb_002475_020 Hb_009515_010 Hb_009515_010 Hb_005218_070--Hb_009515_010 Hb_000237_150--Hb_000852_050 Hb_000237_150--Hb_001405_100 Hb_000616_050 Hb_000616_050 Hb_000237_150--Hb_000616_050 Hb_000649_030 Hb_000649_030 Hb_000237_150--Hb_000649_030 Hb_006006_070 Hb_006006_070 Hb_001405_100--Hb_006006_070 Hb_001405_100--Hb_000852_050 Hb_001405_100--Hb_000649_030 Hb_002081_040--Hb_161393_010 Hb_001621_140 Hb_001621_140 Hb_002081_040--Hb_001621_140 Hb_005653_020 Hb_005653_020 Hb_002081_040--Hb_005653_020 Hb_002081_040--Hb_005218_070 Hb_000951_030 Hb_000951_030 Hb_002081_040--Hb_000951_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.21743 39.764 3.05679 19.0214 0.207887 0.198085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0310621 0 0.0459213 102.347 1.17609

CAGE analysis