Hb_002671_130

Information

Type -
Description -
Location Contig2671: 188912-212490
Sequence    

Annotation

kegg
ID rcu:RCOM_0751130
description GTP-binding protein typa/bipa, putative
nr
ID XP_002529621.1
description GTP-binding protein typa/bipa, putative [Ricinus communis]
swissprot
ID Q8K9C8
description GTP-binding protein TypA/BipA homolog OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=typA PE=3 SV=1
trembl
ID B9SUF2
description GTP-binding protein typa/bipa, putative OS=Ricinus communis GN=RCOM_0751130 PE=4 SV=1
Gene Ontology
ID GO:0005886
description translation factor guf1 chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27837: 190748-194343 , PASA_asmbl_27838: 203968-212345
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002671_130 0.0 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
2 Hb_000661_090 0.066182679 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
3 Hb_003124_120 0.0982479518 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
4 Hb_166127_030 0.101503791 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_016461_030 0.1036478523 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_000640_260 0.1048398612 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
7 Hb_000816_200 0.1142454682 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
8 Hb_000352_220 0.1145175624 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
9 Hb_000495_080 0.1151664507 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
10 Hb_003777_020 0.1152402054 - - Fructose-1,6-bisphosphatase, cytosolic, putative [Ricinus communis]
11 Hb_002282_070 0.1159945517 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
12 Hb_000934_020 0.1160806405 - - PREDICTED: uncharacterized protein LOC105629153 [Jatropha curcas]
13 Hb_001009_260 0.1164275577 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
14 Hb_000189_250 0.1201114763 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
15 Hb_000069_490 0.121812341 - - conserved hypothetical protein [Ricinus communis]
16 Hb_159809_090 0.1222932517 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
17 Hb_002685_060 0.1227100024 - - 30S ribosomal protein S5, putative [Ricinus communis]
18 Hb_001677_220 0.1237841698 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
19 Hb_001723_030 0.1247620154 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
20 Hb_003226_190 0.1252163257 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]

Gene co-expression network

sample Hb_002671_130 Hb_002671_130 Hb_000661_090 Hb_000661_090 Hb_002671_130--Hb_000661_090 Hb_003124_120 Hb_003124_120 Hb_002671_130--Hb_003124_120 Hb_166127_030 Hb_166127_030 Hb_002671_130--Hb_166127_030 Hb_016461_030 Hb_016461_030 Hb_002671_130--Hb_016461_030 Hb_000640_260 Hb_000640_260 Hb_002671_130--Hb_000640_260 Hb_000816_200 Hb_000816_200 Hb_002671_130--Hb_000816_200 Hb_003777_020 Hb_003777_020 Hb_000661_090--Hb_003777_020 Hb_000661_090--Hb_016461_030 Hb_000684_280 Hb_000684_280 Hb_000661_090--Hb_000684_280 Hb_002282_070 Hb_002282_070 Hb_000661_090--Hb_002282_070 Hb_000537_070 Hb_000537_070 Hb_000661_090--Hb_000537_070 Hb_003124_120--Hb_000816_200 Hb_010128_020 Hb_010128_020 Hb_003124_120--Hb_010128_020 Hb_003124_120--Hb_016461_030 Hb_001677_220 Hb_001677_220 Hb_003124_120--Hb_001677_220 Hb_000983_070 Hb_000983_070 Hb_003124_120--Hb_000983_070 Hb_002075_030 Hb_002075_030 Hb_003124_120--Hb_002075_030 Hb_166127_030--Hb_000640_260 Hb_000189_250 Hb_000189_250 Hb_166127_030--Hb_000189_250 Hb_000803_240 Hb_000803_240 Hb_166127_030--Hb_000803_240 Hb_000934_020 Hb_000934_020 Hb_166127_030--Hb_000934_020 Hb_021409_190 Hb_021409_190 Hb_166127_030--Hb_021409_190 Hb_016461_030--Hb_002282_070 Hb_016461_030--Hb_000816_200 Hb_000345_370 Hb_000345_370 Hb_016461_030--Hb_000345_370 Hb_016461_030--Hb_003777_020 Hb_002542_160 Hb_002542_160 Hb_016461_030--Hb_002542_160 Hb_001427_040 Hb_001427_040 Hb_016461_030--Hb_001427_040 Hb_001890_010 Hb_001890_010 Hb_000640_260--Hb_001890_010 Hb_000640_260--Hb_021409_190 Hb_000640_260--Hb_000934_020 Hb_000640_260--Hb_000189_250 Hb_003029_140 Hb_003029_140 Hb_000640_260--Hb_003029_140 Hb_001195_770 Hb_001195_770 Hb_000816_200--Hb_001195_770 Hb_029920_030 Hb_029920_030 Hb_000816_200--Hb_029920_030 Hb_000189_450 Hb_000189_450 Hb_000816_200--Hb_000189_450 Hb_007441_310 Hb_007441_310 Hb_000816_200--Hb_007441_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.41431 8.15061 17.4748 13.1915 5.08012 7.84636
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8384 4.21545 9.41195 10.2461 58.9303

CAGE analysis