Hb_002671_140

Information

Type -
Description -
Location Contig2671: 218734-224239
Sequence    

Annotation

kegg
ID rcu:RCOM_0750920
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID AEI70328.1
description calcium-dependent protein kinase [Hevea brasiliensis]
swissprot
ID Q6NLQ6
description Calcium-dependent protein kinase 32 OS=Arabidopsis thaliana GN=CPK32 PE=1 SV=1
trembl
ID F8V179
description Calcium-dependent protein kinase OS=Hevea brasiliensis GN=CDPK1 PE=2 SV=1
Gene Ontology
ID GO:0031226
description calcium-dependent protein kinase 32-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27840: 218710-224177 , PASA_asmbl_27841: 219765-219971
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002671_140 0.0 - - calcium-dependent protein kinase [Hevea brasiliensis]
2 Hb_000562_090 0.0557947733 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
3 Hb_003609_030 0.0771383461 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
4 Hb_000442_150 0.079429008 - - PREDICTED: uncharacterized protein LOC105649224 [Jatropha curcas]
5 Hb_000661_290 0.0797850169 - - PREDICTED: NAD(H) kinase 1-like isoform X1 [Populus euphratica]
6 Hb_008246_040 0.0799580004 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
7 Hb_057878_010 0.0829174171 - - hypothetical protein VITISV_036304 [Vitis vinifera]
8 Hb_000789_060 0.0845422312 - - PREDICTED: mitogen-activated protein kinase kinase 6 [Jatropha curcas]
9 Hb_000915_020 0.0869161866 - - unnamed protein product [Vitis vinifera]
10 Hb_011310_210 0.0883325712 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
11 Hb_000336_250 0.0893418579 transcription factor TF Family: mTERF hypothetical protein B456_002G027700 [Gossypium raimondii]
12 Hb_001135_130 0.0902928512 - - hypothetical protein CISIN_1g0171752mg, partial [Citrus sinensis]
13 Hb_003464_050 0.0905244043 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
14 Hb_001946_040 0.0912517764 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000125_130 0.0918933053 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC104879785 [Vitis vinifera]
16 Hb_000544_090 0.0926285891 - - PREDICTED: golgin candidate 2 [Jatropha curcas]
17 Hb_013399_100 0.0930671925 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001252_010 0.0934377887 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
19 Hb_003052_140 0.0948998704 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
20 Hb_005993_050 0.0949667848 - - Protein AFR, putative [Ricinus communis]

Gene co-expression network

sample Hb_002671_140 Hb_002671_140 Hb_000562_090 Hb_000562_090 Hb_002671_140--Hb_000562_090 Hb_003609_030 Hb_003609_030 Hb_002671_140--Hb_003609_030 Hb_000442_150 Hb_000442_150 Hb_002671_140--Hb_000442_150 Hb_000661_290 Hb_000661_290 Hb_002671_140--Hb_000661_290 Hb_008246_040 Hb_008246_040 Hb_002671_140--Hb_008246_040 Hb_057878_010 Hb_057878_010 Hb_002671_140--Hb_057878_010 Hb_000562_090--Hb_003609_030 Hb_008643_210 Hb_008643_210 Hb_000562_090--Hb_008643_210 Hb_013399_100 Hb_013399_100 Hb_000562_090--Hb_013399_100 Hb_003464_050 Hb_003464_050 Hb_000562_090--Hb_003464_050 Hb_000915_020 Hb_000915_020 Hb_000562_090--Hb_000915_020 Hb_005993_050 Hb_005993_050 Hb_003609_030--Hb_005993_050 Hb_001252_010 Hb_001252_010 Hb_003609_030--Hb_001252_010 Hb_031527_020 Hb_031527_020 Hb_003609_030--Hb_031527_020 Hb_000179_030 Hb_000179_030 Hb_003609_030--Hb_000179_030 Hb_000502_050 Hb_000502_050 Hb_003609_030--Hb_000502_050 Hb_000442_150--Hb_008246_040 Hb_000982_060 Hb_000982_060 Hb_000442_150--Hb_000982_060 Hb_000442_150--Hb_057878_010 Hb_001135_130 Hb_001135_130 Hb_000442_150--Hb_001135_130 Hb_003893_030 Hb_003893_030 Hb_000442_150--Hb_003893_030 Hb_000521_320 Hb_000521_320 Hb_000661_290--Hb_000521_320 Hb_006816_350 Hb_006816_350 Hb_000661_290--Hb_006816_350 Hb_000868_110 Hb_000868_110 Hb_000661_290--Hb_000868_110 Hb_004586_140 Hb_004586_140 Hb_000661_290--Hb_004586_140 Hb_000661_290--Hb_013399_100 Hb_008246_040--Hb_000915_020 Hb_000020_190 Hb_000020_190 Hb_008246_040--Hb_000020_190 Hb_014497_050 Hb_014497_050 Hb_008246_040--Hb_014497_050 Hb_000185_070 Hb_000185_070 Hb_008246_040--Hb_000185_070 Hb_002400_470 Hb_002400_470 Hb_057878_010--Hb_002400_470 Hb_002078_020 Hb_002078_020 Hb_057878_010--Hb_002078_020 Hb_011310_210 Hb_011310_210 Hb_057878_010--Hb_011310_210 Hb_000236_380 Hb_000236_380 Hb_057878_010--Hb_000236_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.5029 55.1368 37.3061 42.5007 36.6352 63.5688
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.4782 38.7613 47.5657 19.2204 24.1815

CAGE analysis