Hb_002675_040

Information

Type -
Description -
Location Contig2675: 26587-30067
Sequence    

Annotation

kegg
ID rcu:RCOM_0980270
description ran-binding protein, putative
nr
ID XP_002528188.1
description ran-binding protein, putative [Ricinus communis]
swissprot
ID Q9C829
description Nuclear pore complex protein NUP50A OS=Arabidopsis thaliana GN=NUP50A PE=1 SV=1
trembl
ID B9SQB9
description Ran-binding protein, putative OS=Ricinus communis GN=RCOM_0980270 PE=4 SV=1
Gene Ontology
ID GO:0005643
description nuclear pore complex protein nup50a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27848: 26408-26892 , PASA_asmbl_27849: 26345-30054 , PASA_asmbl_27850: 27485-27991
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002675_040 0.0 - - ran-binding protein, putative [Ricinus communis]
2 Hb_033594_020 0.0447412082 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
3 Hb_017895_020 0.052133169 - - Vacuolar protein sorting protein, putative [Ricinus communis]
4 Hb_000343_210 0.0600378845 - - ran-binding protein, putative [Ricinus communis]
5 Hb_001900_120 0.061945661 - - PREDICTED: uncharacterized protein LOC105632666 [Jatropha curcas]
6 Hb_000329_130 0.0684363497 - - beta-tubulin cofactor d, putative [Ricinus communis]
7 Hb_008725_130 0.0735986995 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
8 Hb_000104_080 0.0769286133 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
9 Hb_000035_040 0.0772142941 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
10 Hb_147737_010 0.0774361691 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
11 Hb_000417_160 0.0786614983 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
12 Hb_000805_260 0.078906401 - - PREDICTED: uncharacterized protein LOC105650295 isoform X1 [Jatropha curcas]
13 Hb_140049_020 0.0789869421 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
14 Hb_007885_070 0.0803868521 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
15 Hb_003540_160 0.0821930569 - - hypothetical protein POPTR_0011s12160g [Populus trichocarpa]
16 Hb_000504_160 0.0830978202 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
17 Hb_000120_510 0.0834801249 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
18 Hb_000313_340 0.0855024861 - - DNA repair protein xp-E, putative [Ricinus communis]
19 Hb_015026_050 0.0856392833 - - XPA-binding protein, putative [Ricinus communis]
20 Hb_001946_240 0.0857862638 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]

Gene co-expression network

sample Hb_002675_040 Hb_002675_040 Hb_033594_020 Hb_033594_020 Hb_002675_040--Hb_033594_020 Hb_017895_020 Hb_017895_020 Hb_002675_040--Hb_017895_020 Hb_000343_210 Hb_000343_210 Hb_002675_040--Hb_000343_210 Hb_001900_120 Hb_001900_120 Hb_002675_040--Hb_001900_120 Hb_000329_130 Hb_000329_130 Hb_002675_040--Hb_000329_130 Hb_008725_130 Hb_008725_130 Hb_002675_040--Hb_008725_130 Hb_046615_020 Hb_046615_020 Hb_033594_020--Hb_046615_020 Hb_033594_020--Hb_000343_210 Hb_007885_070 Hb_007885_070 Hb_033594_020--Hb_007885_070 Hb_003656_160 Hb_003656_160 Hb_033594_020--Hb_003656_160 Hb_033594_020--Hb_017895_020 Hb_017895_020--Hb_000329_130 Hb_017895_020--Hb_001900_120 Hb_017895_020--Hb_008725_130 Hb_028872_120 Hb_028872_120 Hb_017895_020--Hb_028872_120 Hb_000914_080 Hb_000914_080 Hb_017895_020--Hb_000914_080 Hb_147737_010 Hb_147737_010 Hb_000343_210--Hb_147737_010 Hb_000035_040 Hb_000035_040 Hb_000343_210--Hb_000035_040 Hb_000331_190 Hb_000331_190 Hb_000343_210--Hb_000331_190 Hb_000531_090 Hb_000531_090 Hb_000343_210--Hb_000531_090 Hb_003020_110 Hb_003020_110 Hb_000343_210--Hb_003020_110 Hb_001900_120--Hb_000329_130 Hb_001050_010 Hb_001050_010 Hb_001900_120--Hb_001050_010 Hb_011609_170 Hb_011609_170 Hb_001900_120--Hb_011609_170 Hb_001900_120--Hb_008725_130 Hb_000329_130--Hb_147737_010 Hb_010315_090 Hb_010315_090 Hb_000329_130--Hb_010315_090 Hb_140049_020 Hb_140049_020 Hb_000329_130--Hb_140049_020 Hb_007558_120 Hb_007558_120 Hb_000329_130--Hb_007558_120 Hb_009151_020 Hb_009151_020 Hb_000329_130--Hb_009151_020 Hb_008725_130--Hb_011609_170 Hb_008725_130--Hb_000329_130 Hb_005408_020 Hb_005408_020 Hb_008725_130--Hb_005408_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
115.812 54.6874 41.4049 23.8286 106.761 87.42
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.7948 21.3437 30.3795 34.6277 29.6113

CAGE analysis