Hb_002675_070

Information

Type -
Description -
Location Contig2675: 61464-67333
Sequence    

Annotation

kegg
ID rcu:RCOM_0979860
description hypothetical protein
nr
ID XP_012073306.1
description PREDICTED: protein CASC3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQD5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06244 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002675_070 0.0 - - PREDICTED: protein CASC3 [Jatropha curcas]
2 Hb_004032_150 0.0662042959 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
3 Hb_011485_070 0.0668902732 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
4 Hb_000127_040 0.0708120135 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
5 Hb_002213_070 0.0732854181 - - epsilon-adaptin family protein [Populus trichocarpa]
6 Hb_000185_040 0.0743364769 - - PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
7 Hb_001198_100 0.0763542586 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
8 Hb_000192_080 0.0764137351 - - PREDICTED: serine/threonine-protein kinase SAPK3 isoform X1 [Jatropha curcas]
9 Hb_000318_290 0.0788802478 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
10 Hb_011037_030 0.0791746544 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
11 Hb_007479_040 0.0808907987 - - conserved hypothetical protein [Ricinus communis]
12 Hb_054865_150 0.0813065823 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
13 Hb_002110_190 0.0817515832 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
14 Hb_000173_490 0.0827107784 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
15 Hb_007638_030 0.0843597149 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
16 Hb_002685_110 0.0856478273 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
17 Hb_000665_100 0.0860883794 - - PREDICTED: neurochondrin [Jatropha curcas]
18 Hb_003680_120 0.0869147093 - - PREDICTED: E3 ubiquitin-protein ligase UPL7 [Jatropha curcas]
19 Hb_010964_040 0.0869616236 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
20 Hb_000172_290 0.0871725449 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]

Gene co-expression network

sample Hb_002675_070 Hb_002675_070 Hb_004032_150 Hb_004032_150 Hb_002675_070--Hb_004032_150 Hb_011485_070 Hb_011485_070 Hb_002675_070--Hb_011485_070 Hb_000127_040 Hb_000127_040 Hb_002675_070--Hb_000127_040 Hb_002213_070 Hb_002213_070 Hb_002675_070--Hb_002213_070 Hb_000185_040 Hb_000185_040 Hb_002675_070--Hb_000185_040 Hb_001198_100 Hb_001198_100 Hb_002675_070--Hb_001198_100 Hb_004767_100 Hb_004767_100 Hb_004032_150--Hb_004767_100 Hb_007416_280 Hb_007416_280 Hb_004032_150--Hb_007416_280 Hb_001638_170 Hb_001638_170 Hb_004032_150--Hb_001638_170 Hb_000318_290 Hb_000318_290 Hb_004032_150--Hb_000318_290 Hb_148644_010 Hb_148644_010 Hb_004032_150--Hb_148644_010 Hb_001489_150 Hb_001489_150 Hb_004032_150--Hb_001489_150 Hb_011485_070--Hb_000185_040 Hb_001341_170 Hb_001341_170 Hb_011485_070--Hb_001341_170 Hb_011485_070--Hb_004032_150 Hb_000092_170 Hb_000092_170 Hb_011485_070--Hb_000092_170 Hb_002481_080 Hb_002481_080 Hb_011485_070--Hb_002481_080 Hb_000127_040--Hb_002213_070 Hb_004935_030 Hb_004935_030 Hb_000127_040--Hb_004935_030 Hb_007803_050 Hb_007803_050 Hb_000127_040--Hb_007803_050 Hb_000457_260 Hb_000457_260 Hb_000127_040--Hb_000457_260 Hb_032050_040 Hb_032050_040 Hb_000127_040--Hb_032050_040 Hb_054865_150 Hb_054865_150 Hb_000127_040--Hb_054865_150 Hb_001492_020 Hb_001492_020 Hb_002213_070--Hb_001492_020 Hb_000613_050 Hb_000613_050 Hb_002213_070--Hb_000613_050 Hb_002110_190 Hb_002110_190 Hb_002213_070--Hb_002110_190 Hb_000789_310 Hb_000789_310 Hb_002213_070--Hb_000789_310 Hb_000890_210 Hb_000890_210 Hb_002213_070--Hb_000890_210 Hb_002740_180 Hb_002740_180 Hb_000185_040--Hb_002740_180 Hb_001377_490 Hb_001377_490 Hb_000185_040--Hb_001377_490 Hb_000185_040--Hb_000318_290 Hb_000185_040--Hb_001341_170 Hb_002435_120 Hb_002435_120 Hb_000185_040--Hb_002435_120 Hb_009767_110 Hb_009767_110 Hb_001198_100--Hb_009767_110 Hb_000028_480 Hb_000028_480 Hb_001198_100--Hb_000028_480 Hb_006649_050 Hb_006649_050 Hb_001198_100--Hb_006649_050 Hb_006915_030 Hb_006915_030 Hb_001198_100--Hb_006915_030 Hb_001409_020 Hb_001409_020 Hb_001198_100--Hb_001409_020 Hb_001198_100--Hb_001341_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8031 16.936 10.6452 18.6093 12.8741 29.1449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.3972 16.4345 23.4509 18.1111 14.0915

CAGE analysis